Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyD-lactate/D-glycerate dehydrogenase-like 8056164 4000099 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyD-2-hydroxyacid dehydrogenase-like 8056165 3000044 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyD-2-hydroxyacid dehydrogenase-like 8056165 3000044 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A2-Hacid_dh_Ce1gdhA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: 2-Hacid_dh_CECOD (1.6)
A2-Hacid_dhe1gdhA2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Formate/glycerate dehydrogenase catalytic domain-likeF: 2-Hacid_dhECOD (1.6)
B2-Hacid_dh_Ce1gdhB1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: 2-Hacid_dh_CECOD (1.6)
B2-Hacid_dhe1gdhB2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Formate/glycerate dehydrogenase catalytic domain-likeF: 2-Hacid_dhECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02826D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (2-Hacid_dh_C)D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domainThis domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family Pfam:PF00389.Domain
A, B
PF00389D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (2-Hacid_dh)D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domainThis family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
glycerate dehydrogenase  M-CSA #571

D-Glycerate dehydrogenase (GDH) catalyses the NADH-dependent reduction of hydroxypyruvate to D-glycerate. In the species Hyphomicrobium methylovorum, GDH operates in a specialised serine pathway in which formaldehyde is assimilated into cellular material. This enables methyltrophic bacteria to utilise one carbon compounds as sole sources of carbon and energy.

Defined by 3 residues: ARG:A-239 [auth A-240]GLU:A-268 [auth A-269]HIS:A-286 [auth A-287]
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