1GPR | pdb_00001gpr

REFINED CRYSTAL STRUCTURE OF IIA DOMAIN OF THE GLUCOSE PERMEASE OF BACILLUS SUBTILIS AT 1.9 ANGSTROMS RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1gpra_	All beta proteins	Barrel-sandwich hybrid	Duplicated hybrid motif	Glucose permease-like	Glucose permease IIa domain, IIa-glc	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Glucose permease-like	8030736	4002943	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Duplicated hybrid motif	8043115	3001927	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PTS_EIIA_1	e1gprA1	A: few secondary structure elements	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Duplicated hybrid motif	F: PTS_EIIA_1	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 (PTS_EIIA_1)	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	GLUCOSE PERMEASE	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups active transmembrane transporter activity protein-N(PI)-phosphohistidine-carbohydrate phosphotransferase activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity phosphotransferase activity, alcohol group as acceptor monosaccharide transmembrane transporter activity sugar transmembrane transporter activity D-glucose transmembrane transporter activity hexose transmembrane transporter activity kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups active transmembrane transporter activity protein-N(PI)-phosphohistidine-carbohydrate phosphotransferase activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity phosphotransferase activity, alcohol group as acceptor monosaccharide transmembrane transporter activity sugar transmembrane transporter activity D-glucose transmembrane transporter activity hexose transmembrane transporter activity protein-phosphocysteine-sugar phosphotransferase activity	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport hexose transmembrane transport D-glucose transmembrane transport monosaccharide transmembrane transport	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018113	Phosphotransferase system EIIB, cysteine phosphorylation site	Conserved Site
A	IPR013013	Phosphotransferase system, EIIC component, type 1	Domain
A	IPR001127	Phosphotransferase system, sugar-specific permease EIIA type 1	Domain
A	IPR011299	PTS system glucose-specific IIBC component	Domain
A	IPR011055	Duplicated hybrid motif	Homologous Superfamily
A	IPR036878	Glucose permease domain IIB	Homologous Superfamily
A	IPR050429	Phosphotransferase System Glucose-Specific EIICBA	Family
A	IPR001996	Phosphotransferase system, IIB component, type 1	Domain
A	IPR004719	Phosphotransferase system, maltose/glucose-specific subfamily IIC component	Domain
A	IPR003352	Phosphotransferase system, EIIC	Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	protein-Npi-phosphohistidine---sugar phosphotransferase (type II) M-CSA #513	Glucose permease IIA domain functions as part of phosphorylation of sugars, a phosphoryl group is transferred from Hpr to IIA Domain via a histidyl residue then to IIB domain- then finally to a sugar which is being transported into the organism. It is part of the bacterial phosphotransferase system (PTS) phosphorylation cascade. It should be noted that there is very little sequence similarity across the enzymes containing IIA that are specific to different sugars they inevitably transport.	Defined by 3 residues: THR:A-66HIS:A-68HIS:A-83 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 2.7.1.69 (PDB Primary Data) Search M-CSA Motif + EC 2.7.1.69 EC: 2.7.1.199 (UniProt) Search M-CSA Motif + EC 2.7.1.199

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.