1GXM | pdb_00001gxm

Family 10 polysaccharide lyase from Cellvibrio cellulosa

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1gxmb1	All alpha proteins	alpha/alpha toroid	Family 10 polysaccharide lyase	Family 10 polysaccharide lyase	Polygalacturonic acid lyase (pectate lyase)	(Cellvibrio japonicus ) [TaxId: 155077 ],	SCOPe (2.08)
B	d1gxmb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Cellvibrio japonicus ) [TaxId: 155077 ],	SCOPe (2.08)
A	d1gxma1	All alpha proteins	alpha/alpha toroid	Family 10 polysaccharide lyase	Family 10 polysaccharide lyase	Polygalacturonic acid lyase (pectate lyase)	(Cellvibrio japonicus ) [TaxId: 155077 ],	SCOPe (2.08)
A	d1gxma2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Cellvibrio japonicus ) [TaxId: 155077 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Family 10 polysaccharide lyase	8042295	3001248	SCOP2B (2022-06-29)
A	SCOP2 Family	Family 10 polysaccharide lyase	8029916	4002442	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Family 10 polysaccharide lyase	8042295	3001248	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ank+Ank_2+Ank_4	e1gxmB1	A: alpha bundles	X: EGF-like	H: Ankyrin repeat	T: Ankyrin repeat	F: Ank+Ank_2+Ank_4	ECOD (develop294)
A	Pec_lyase	e1gxmA1	A: alpha bundles	X: Repetitive alpha hairpins	H: alpha/alpha toroid	T: alpha/alpha toroid	F: Pec_lyase	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.50.10.20	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
A	1.50.10.20	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	PECTATE LYASE	binding polysaccharide binding carbohydrate binding lyase activity catalytic activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR012291	CBM2, carbohydrate-binding domain superfamily	Homologous Superfamily
A, B	IPR005084	Carbohydrate binding module family 6	Domain
A, B	IPR012669	Pectic acid lyase	Family
A, B	IPR018366	Carbohydrate-binding type-2, conserved site	Conserved Site
A, B	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
A, B	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A, B	IPR001919	Carbohydrate-binding type-2 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.