1HF0 | pdb_00001hf0

Crystal structure of the DNA-binding domain of Oct-1 bound to DNA as a dimer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B Superfamilylambda C1 repressor DNA-binding domain-like 8017633 3000119 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHomeodomain-like 8017635 3000001 SCOP2B (2022-06-29)
BSCOP2B Superfamilylambda C1 repressor DNA-binding domain-like 8017633 3000119 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHomeodomain-like 8017635 3000001 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AFe_dep_represse1hf0A1 A: alpha bundlesX: EGF-likeH: YozE-likeT: Ribbon-helix-helixF: Fe_dep_repressECOD (develop294)
APhage_CIIe1hf0A2 A: alpha bundlesX: EGF-likeH: YozE-likeT: Ribbon-helix-helixF: Phage_CIIECOD (develop294)
BFe_dep_represse1hf0B1 A: alpha bundlesX: EGF-likeH: YozE-likeT: Ribbon-helix-helixF: Fe_dep_repressECOD (develop294)
BPhage_CIIe1hf0B2 A: alpha bundlesX: EGF-likeH: YozE-likeT: Ribbon-helix-helixF: Phage_CIIECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00046Homeodomain (Homeodomain)HomeodomainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
OCTAMER-BINDING TRANSCRIPTION FACTOR 1
C [auth M]DNA 5'-D(*CP*AP*CP*AP*TP*TP*TP*GP*AP*AP*AP*GP*GP* CP*AP*AP*AP*TP*GP*GP*AP*G)-3'---
D [auth N]DNA 5'-D(*CP*TP*CP*CP*AP*TP*TP*TP*GP*CP*CP*TP*TP* TP*CP*AP*AP*AP*TP*GP*TP*G)-3'---