1JI1 | pdb_00001ji1

Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1ji1b1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	E-set domains of sugar-utilizing enzymes	Maltogenic amylase, N-terminal domain N	(Thermoactinomyces vulgaris ) [TaxId: 2026 ],	SCOPe (2.08)
B	d1ji1b2	All beta proteins	Glycosyl hydrolase domain	Glycosyl hydrolase domain	alpha-Amylases, C-terminal beta-sheet domain	Maltogenic amylase	(Thermoactinomyces vulgaris ) [TaxId: 2026 ],	SCOPe (2.08)
B	d1ji1b3	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Amylase, catalytic domain	Maltogenic amylase, central domain	(Thermoactinomyces vulgaris ) [TaxId: 2026 ],	SCOPe (2.08)
A	d1ji1a1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	E-set domains of sugar-utilizing enzymes	Maltogenic amylase, N-terminal domain N	(Thermoactinomyces vulgaris ) [TaxId: 2026 ],	SCOPe (2.08)
A	d1ji1a2	All beta proteins	Glycosyl hydrolase domain	Glycosyl hydrolase domain	alpha-Amylases, C-terminal beta-sheet domain	Maltogenic amylase	(Thermoactinomyces vulgaris ) [TaxId: 2026 ],	SCOPe (2.08)
A	d1ji1a3	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Amylase, catalytic domain	Maltogenic amylase, central domain	(Thermoactinomyces vulgaris ) [TaxId: 2026 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8039902	3001528	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8039904	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	E set domains	8054925	3000070	SCOP2B (2022-06-29)
A	SCOP2 Family	alpha-Amylases, C-terminal beta-sheet domain	8027523	4002636	SCOP2 (2022-06-29)
A	SCOP2 Family	Amylase, catalytic domain	8027525	4003138	SCOP2 (2022-06-29)
A	SCOP2 Family	E-set domains of sugar-utilizing enzymes	8054924	4007565	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Glycosyl hydrolase domain-like	8039902	3001528	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	(Trans)glycosidases	8039904	3000313	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	E set domains	8054925	3000070	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e1ji1B1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
B		e1ji1B2	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Ldl_recept_b	F:	ECOD (20:10:01)
B		e1ji1B3	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Alpha-amylase	F:	ECOD (20:10:01)
A		e1ji1A1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	T: Alpha-amylase_N	F:	ECOD (20:10:01)
A		e1ji1A2	A: Glycosyl hydrolase domain-like	X: Glycosyl hydrolase domain	H: Glycosyl hydrolase domain	T: Cyc-maltodext_C	F:	ECOD (20:10:01)
A		e1ji1A3	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T: Alpha-amylase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B	2.60.40.1180	Mainly Beta	Sandwich	Immunoglobulin-like	Golgi alpha-mannosidase II	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	2.60.40.1180	Mainly Beta	Sandwich	Immunoglobulin-like	Golgi alpha-mannosidase II	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ALPHA-AMYLASE I	hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity neopullulanase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B	IPR004185	Glycoside hydrolase, family 13, N-terminal Ig-like domain	Domain
A, B	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B	IPR006047	Glycosyl hydrolase family 13, catalytic domain	Domain
A, B	IPR013780	Glycosyl hydrolase, all-beta	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.