1OTK | pdb_00001otk

Structural Genomics, Protein paaC

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1otka1	All alpha proteins	Ferritin-like	Ferritin-like	Ribonucleotide reductase-like	Phenylacetic acid degradation protein PaaC	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d1otka2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d1otkb1	All alpha proteins	Ferritin-like	Ferritin-like	Ribonucleotide reductase-like	Phenylacetic acid degradation protein PaaC	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d1otkb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Ribonucleotide reductase-like	8025396	4000846	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ferritin-like	8037775	3001658	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8037775	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1otkA1	A: Ferritin/Heme oxygenase/4-helical cytokines	X: Ferritin/Heme oxygenase	H: Heme oxygenase/Ribonucleotide reductase	T: FA_desaturase_2	F:	ECOD (20:10:01)
B		e1otkB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05138	Phenylacetic acid catabolic protein (PaaA_PaaC)	Phenylacetic acid catabolic protein	This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [1]. These proteins may form part of a dioxygenase complex.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Phenylacetic acid degradation protein paaC	-	cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus oxoacid metabolic process cellular response to xenobiotic stimulus carboxylic acid metabolic process organic acid catabolic process organic acid metabolic process xenobiotic catabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus monocarboxylic acid catabolic process response to chemical cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus oxoacid metabolic process cellular response to xenobiotic stimulus carboxylic acid metabolic process organic acid catabolic process organic acid metabolic process xenobiotic catabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus monocarboxylic acid catabolic process response to chemical carboxylic acid catabolic process phenylacetate catabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process small molecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol phenylacetyl-CoA 1,2-epoxidase complex protein-containing complex catalytic complex oxidoreductase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR052703	Aromatic CoA oxygenase/epoxidase components	Family
A, B	IPR012347	Ferritin-like	Homologous Superfamily
A, B	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B	IPR007814	1,2-phenylacetyl-CoA epoxidase, subunit A/C	Family
A, B	IPR011882	1,2-phenylacetyl-CoA epoxidase, subunit C	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.