1PDJ | pdb_00001pdj

Fitting of gp27 into cryoEM reconstruction of bacteriophage T4 baseplate


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth D]SCOP2B SuperfamilyPhage tail proteins 8037751 3000268 SCOP2B (2022-06-29)
A [auth D]SCOP2B SuperfamilyPhage tail proteins 8037753 3000268 SCOP2B (2022-06-29)
B [auth E]SCOP2B SuperfamilyPhage tail proteins 8037751 3000268 SCOP2B (2022-06-29)
B [auth E]SCOP2B SuperfamilyPhage tail proteins 8037753 3000268 SCOP2B (2022-06-29)
C [auth F]SCOP2B SuperfamilyPhage tail proteins 8037751 3000268 SCOP2B (2022-06-29)
C [auth F]SCOP2B SuperfamilyPhage tail proteins 8037753 3000268 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]DHDPSe1pdjD1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
B [auth E]DHDPSe1pdjE1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
C [auth F]DHDPSe1pdjF1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D],
B [auth E],
C [auth F]
PF09096Baseplate structural protein, domain 2 (Phage-tail_2)Baseplate structural protein, domain 2Members of this family adopt a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. They are structural component of the viral baseplate, predominantly found in the structural protein gp27 [ ...Members of this family adopt a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. They are structural component of the viral baseplate, predominantly found in the structural protein gp27 [1].
Domain
A [auth D],
B [auth E],
C [auth F]
PF09097Baseplate structural protein, domain 1 (Phage-tail_1)Baseplate structural protein, domain 1Members of this family adopt a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. They are structural component of the viral baseplate, predominantly found in the structural protein gp27 [ ...Members of this family adopt a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. They are structural component of the viral baseplate, predominantly found in the structural protein gp27 [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D],
B [auth E],
C [auth F]
Baseplate structural protein Gp27-