1S99 | pdb_00001s99

The structure and function of B. subtilis YkoF gene product: ligand free protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1s99a_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH1187/YkoF-like	Putative thiamin/HMP-binding protein YkoF	Putative thiamin/HMP-binding protein YkoF	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d1s99b_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH1187/YkoF-like	Putative thiamin/HMP-binding protein YkoF	Putative thiamin/HMP-binding protein YkoF	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Putative thiamin/HMP-binding protein YkoF	8029938	4002684	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MTH1187/YkoF-like	8042317	3000874	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	MTH1187/YkoF-like	8042317	3000874	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ykof	e1s99A2	A: alpha bundles	X: beta-beta-alpha zinc fingers	H: beta-beta-alpha zinc fingers	T: beta-beta-alpha zinc fingers	F: Ykof	ECOD (develop294)
B	TbpB_A	e1s99B1	A: alpha bundles	X: Ribosomal protein L31e-like	H: Reductive activator for corrinoid/iron-sulfur protein second domain	T: Reductive activator for corrinoid/iron-sulfur protein second domain	F: TbpB_A	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.930	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.70.930	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07615	YKOF-related Family (Ykof)	YKOF-related Family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ykoF	cation binding vitamin binding thiamine binding binding ion binding alcohol binding heterocyclic compound binding small molecule binding sulfur compound binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR029756	MTH1187/YkoF-like	Homologous Superfamily
A, B	IPR011522	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Domain
A, B	IPR015835	Hydroxymethyl pyrimidine (HMP)/thiamine binding protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.