1UJD

Solution Structure of RSGI RUH-003, a PDZ domain of hypothetical KIAA0559 protein from human cDNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ujda1	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	Hypothetical protein KIAA0559	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ujda3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ujda2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PDZ domain	8029455	4001790	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PDZ domain-like	8041834	3000388	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PDZ	e1ujdA1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	KIAA0559 protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding profilin binding protein binding calcium-dependent phospholipid binding phospholipid binding lipid binding structural constituent of presynaptic active zone structural molecule activity structural constituent of synapse	protein localization localization cellular localization protein localization to synapse cellular macromolecule localization macromolecule localization cellular process protein localization to cell junction vesicle localization transport synaptic vesicle clustering synaptic vesicle cycle establishment of localization vesicle-mediated transport protein localization localization cellular localization protein localization to synapse cellular macromolecule localization macromolecule localization cellular process protein localization to cell junction vesicle localization transport synaptic vesicle clustering synaptic vesicle cycle establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse organelle localization establishment of localization in cell synaptic vesicle localization cellular component organization organelle organization cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process presynaptic active zone organization presynapse organization nervous system development cellular component biogenesis multicellular organism development cellular component assembly cell junction organization cell junction assembly presynaptic active zone assembly anatomical structure development synapse organization synapse assembly presynapse assembly system development regulation of localization regulation of biological process regulation of cellular process regulation of transport secretion biological regulation export from cell regulation of vesicle-mediated transport regulation of secretion regulation of secretion by cell secretion by cell exocytosis regulation of exocytosis regulated exocytosis signaling synaptic vesicle exocytosis cell communication synaptic signaling signal release trans-synaptic signaling neurotransmitter secretion cell-cell signaling neurotransmitter transport chemical synaptic transmission signal release from synapse anterograde trans-synaptic signaling establishment of protein localization nitrogen compound transport hormone secretion protein localization to extracellular region peptide secretion amide transport regulation of biological quality regulation of hormone levels establishment of protein localization to extracellular region protein secretion peptide transport protein transport peptide hormone secretion hormone transport insulin secretion actin cytoskeleton organization presynaptic actin cytoskeleton organization actin filament-based process presynaptic cytoskeleton organization	intracellular anatomical structure cell cortex cortical cytoskeleton cytoskeleton of presynaptic active zone synapse intracellular membraneless organelle cytoplasmic region presynaptic active zone cytoplasmic component presynaptic cytoskeleton intracellular organelle cell periphery presynapse cellular anatomical structure cytoskeleton intracellular anatomical structure cell cortex cortical cytoskeleton cytoskeleton of presynaptic active zone synapse intracellular membraneless organelle cytoplasmic region presynaptic active zone cytoplasmic component presynaptic cytoskeleton intracellular organelle cell periphery presynapse cellular anatomical structure cytoskeleton organelle cell junction membraneless organelle cell cortex region cytoplasm presynaptic active zone extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle GABA-ergic synapse glutamatergic synapse postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse axon cell projection neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000008	C2 domain	Domain
A	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A	IPR052098	Presynaptic Scaffold Protein Bassoon/Piccolo	Family
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR042720	Piccolo, FYVE-related domain 1	Domain
A	IPR036034	PDZ superfamily	Homologous Superfamily
A	IPR035892	C2 domain superfamily	Homologous Superfamily
A	IPR008899	Zinc finger, piccolo-type	Domain
A	IPR001478	PDZ domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9Y6V0	pontocerebellar hypoplasia type 3 bipolar disorder Mental Depression ovarian cancer subependymal giant cell astrocytoma astrocytic tumor atypical teratoid rhabdoid tumor interstitial cystitis major depressive disorder malignant mesothelioma neurodegenerative disease Pick disease primitive neuroectodermal tumor transitional cell carcinoma autism spectrum disorder pontocerebellar hypoplasia type 3 bipolar disorder Mental Depression ovarian cancer subependymal giant cell astrocytoma astrocytic tumor atypical teratoid rhabdoid tumor interstitial cystitis major depressive disorder malignant mesothelioma neurodegenerative disease Pick disease primitive neuroectodermal tumor transitional cell carcinoma autism spectrum disorder depressive disorder glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma oligodendroglioma pilocytic astrocytoma psoriasis attention deficit hyperactivity disorder, inattentive type endogenous depression intellectual disability lung carcinoma malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.