1VBO | pdb_00001vbo

Crystal structure of artocarpin-mannotriose complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1vbob_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
C	d1vboc_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
D	d1vbod_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
E	d1vboe_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
F	d1vbof_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
G	d1vbog_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
H	d1vboh_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
A	d1vboa_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
A	SCOP2 Family	Mannose-binding lectins	8028874	4002758	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Endotoxin_M	e1vboB1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Endotoxin_M	ECOD (develop294)
C	Endotoxin_M	e1vboC1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Endotoxin_M	ECOD (develop294)
D	Endotoxin_M	e1vboD1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Endotoxin_M	ECOD (develop294)
E	Endotoxin_M	e1vboE1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Endotoxin_M	ECOD (develop294)
F	Endotoxin_M	e1vboF1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Endotoxin_M	ECOD (develop294)
G	Endotoxin_M	e1vboG1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Endotoxin_M	ECOD (develop294)
H	Endotoxin_M	e1vboH1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Endotoxin_M	ECOD (develop294)
A	Endotoxin_M	e1vboA1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Endotoxin_M	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
C	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
D	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
E	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
F	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
G	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
H	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
A	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	artocarpin	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding D-glucose binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036404	Jacalin-like lectin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR033734	Jacalin-like lectin domain, plant	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001229	Jacalin-like lectin domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.