1VGZ
Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1vgza_ | Alpha and beta proteins (a/b) | Nucleotide-diphospho-sugar transferases | Nucleotide-diphospho-sugar transferases | Cytidylytransferase | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) | (Neisseria gonorrhoeae ) [TaxId: 485 ], | SCOPe (2.08) |
B | d1vgzb_ | Alpha and beta proteins (a/b) | Nucleotide-diphospho-sugar transferases | Nucleotide-diphospho-sugar transferases | Cytidylytransferase | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) | (Neisseria gonorrhoeae ) [TaxId: 485 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IspD | e1vgzA1 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: IspD | ECOD (1.6) |
B | IspD | e1vgzB1 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: IspD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.550.10 | Alpha Beta | Alpha-Beta Complex | Spore Coat Polysaccharide Biosynthesis Protein SpsA | Chain A | CATH (4.3.0) |
B | 3.90.550.10 | Alpha Beta | Alpha-Beta Complex | Spore Coat Polysaccharide Biosynthesis Protein SpsA | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01128 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR034683 | Cytidylyltransferase IspD/TarI | Family | |
IPR018294 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site | Conserved Site | |
IPR029044 | Nucleotide-diphospho-sugar transferases | Homologous Superfamily | |
IPR001228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Family | |
IPR050088 | IspD/TarI cytidylyltransferase, baterial-type | Family |