1VH0

Crystal structure of a hypothetical protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vh0a1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
A	d1vh0a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
B	d1vh0b1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
B	d1vh0b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
C	d1vh0c1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
C	d1vh0c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
D	d1vh0d1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
D	d1vh0d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
E	d1vh0e1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
E	d1vh0e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
F	d1vh0f1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
F	d1vh0f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YbeA-like	8023377	4002973	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha/beta knot	8035757	3001122	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SPOUT_MTase	e1vh0A1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
B	SPOUT_MTase	e1vh0B1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
C	SPOUT_MTase	e1vh0C1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
D	SPOUT_MTase	e1vh0D1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
E	SPOUT_MTase	e1vh0E1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
F	SPOUT_MTase	e1vh0F1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
B	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
C	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
D	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
E	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
F	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF02590	Predicted SPOUT methyltransferase (SPOUT_MTase)	Predicted SPOUT methyltransferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Hypothetical UPF0247 protein SAV0024/SA0023	RNA methyltransferase activity rRNA methyltransferase activity rRNA (pseudouridine-N3-)-methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity rRNA (pseudouridine) methyltransferase activity methyltransferase activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR029028	Alpha/beta knot methyltransferases	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR003742	RNA methyltransferase RlmH	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.