CRYSTAL STRUCTURE OF a YBJQ-LIKE FOLD PROTEIN OF UNKNOWN FUNCTION (BH3498) FROM BACILLUS HALODURANS AT 1.46 A RESOLUTION
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1vmfa1 | Alpha and beta proteins (a+b) | YjbQ-like | YjbQ-like | YjbQ-like | Hypothetical protein BH3498 | (Halalkalibacterium halodurans ) [TaxId: 86665 ], | SCOPe (2.08) |
| A | d1vmfa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Halalkalibacterium halodurans ) [TaxId: 86665 ], | SCOPe (2.08) |
| B | d1vmfb1 | Alpha and beta proteins (a+b) | YjbQ-like | YjbQ-like | YjbQ-like | Hypothetical protein BH3498 | (Halalkalibacterium halodurans ) [TaxId: 86665 ], | SCOPe (2.08) |
| B | d1vmfb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Halalkalibacterium halodurans ) [TaxId: 86665 ], | SCOPe (2.08) |
| C | d1vmfc1 | Alpha and beta proteins (a+b) | YjbQ-like | YjbQ-like | YjbQ-like | Hypothetical protein BH3498 | (Halalkalibacterium halodurans ) [TaxId: 86665 ], | SCOPe (2.08) |
| C | d1vmfc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Halalkalibacterium halodurans ) [TaxId: 86665 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | YjbQ-like | 8030706 | 4002602 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | YjbQ-like | 8043085 | 3001472 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | YjbQ-like | 8043085 | 3001472 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | YjbQ-like | 8043085 | 3001472 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Nup35_RRM | e1vmfA1 | A: alpha bundles | X: EGF-like | H: Rpp14/Pop5-like | T: Rpp14/Pop5-like | F: Nup35_RRM | ECOD (develop294) |
| B | Nup35_RRM | e1vmfB1 | A: alpha bundles | X: EGF-like | H: Rpp14/Pop5-like | T: Rpp14/Pop5-like | F: Nup35_RRM | ECOD (develop294) |
| C | Nup35_RRM | e1vmfC1 | A: alpha bundles | X: EGF-like | H: Rpp14/Pop5-like | T: Rpp14/Pop5-like | F: Nup35_RRM | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.120.460 | Mainly Beta | Sandwich | Jelly Rolls | YjbQ-like | CATH (4.3.0) |
| B | 2.60.120.460 | Mainly Beta | Sandwich | Jelly Rolls | YjbQ-like | CATH (4.3.0) |
| C | 2.60.120.460 | Mainly Beta | Sandwich | Jelly Rolls | YjbQ-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01894 | UPF0047 protein YjbQ-like (YjbQ) | UPF0047 protein YjbQ-like | - | Family |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR035917 | YjbQ-like superfamily | Homologous Superfamily | |
| IPR001602 | UPF0047 protein YjbQ-like | Family |
