1Z7Z
Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F [auth I] | d1z7zi1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C2 set domains | Intercellular cell adhesion molecule-1 (ICAM-1) | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F [auth I] | d1z7zi3 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | I set domains | Intercellular adhesion molecule-1, ICAM-1 | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth 3] | SCOP2 Family | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | 8068021 | 4003466 | SCOP2 (2022-06-29) |
C [auth 3] | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8068022 | 3000918 | SCOP2 (2022-06-29) |
F [auth I] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054755 | 3000071 | SCOP2B (2022-06-29) |
F [auth I] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054735 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | Rhv_5 | e1z7z11 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_5 | ECOD (1.6) |
B [auth 2] | Rhv_1 | e1z7z21 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_1 | ECOD (1.6) |
C [auth 3] | Rhv_3 | e1z7z31 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_3 | ECOD (1.6) |
F [auth I] | ICAM_N | e1z7zI9 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ICAM_N | ECOD (1.6) |
F [auth I] | I-set_4 | e1z7zI7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: I-set_4 | ECOD (1.6) |
F [auth I] | C1-set_like | e1z7zI6 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_like | ECOD (1.6) |
F [auth I] | C1-set | e1z7zI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth 2] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |
F [auth I] | PF21146 | ICAM-1/3/5, D2 domain (ICAM1_3_5_D2) | ICAM-1/3/5, D2 domain | ICAMs promote intercellular adhesion and are important in inflammation, immune responses and in intracellular signalling events [1-5]. They belong to the Ig-like superfamily and differ in their cell expression patterns and numbers of Ig-like domains ... | Domain |
F [auth I] | PF13895 | Immunoglobulin domain (Ig_2) | Immunoglobulin domain | This domain contains immunoglobulin-like domains. | Domain |
F [auth I] | PF03921 | Intercellular adhesion molecule (ICAM), N-terminal domain (ICAM_N) | Intercellular adhesion molecule (ICAM), N-terminal domain | ICAMs normally functions to promote intercellular adhesion and signalling. However, The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes, during the viral attachment process [1]. This family ... | Domain |