1Z9M | pdb_00001z9m

Crystal Structure of Nectin-like molecule-1 protein Domain 1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Hepar_II_III	e1z9mB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.1)
A	Hepar_II_III	e1z9mA1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	GAPA225	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	cell adhesion cell-cell adhesion homophilic cell-cell adhesion cellular process heterophilic cell-cell adhesion	cell-cell junction cellular anatomical structure anchoring junction cell junction cell periphery plasma membrane membrane presynapse synapse presynaptic membrane plasma membrane region synaptic membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, B	IPR003598	Immunoglobulin subtype 2	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR013106	Immunoglobulin V-set domain	Domain
A, B	IPR003599	Immunoglobulin domain subtype	Domain
A, B	IPR013162	CD80-like, immunoglobulin C2-set	Domain
A, B	IPR007110	Immunoglobulin-like domain	Domain
A, B	IPR003585	Neurexin/syndecan/glycophorin C	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q8N126	psoriasis attention deficit hyperactivity disorder, inattentive type cutaneous lupus erythematosus large cell medulloblastoma medulloblastoma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor cystic fibrosis malignant glioma neurodegenerative disease peripheral neuropathy Charcot-Marie-Tooth disease glioblastoma malignant mesothelioma psoriasis attention deficit hyperactivity disorder, inattentive type cutaneous lupus erythematosus large cell medulloblastoma medulloblastoma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor cystic fibrosis malignant glioma neurodegenerative disease peripheral neuropathy Charcot-Marie-Tooth disease glioblastoma malignant mesothelioma osteosarcoma pituitary cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.