2BM8 | pdb_00002bm8

CmcI-N160 apo-structure

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2bm8a1	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
C	d2bm8c_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
E	d2bm8e_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
F	d2bm8f_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
G	d2bm8g_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
H	d2bm8h_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
I	d2bm8i_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
J	d2bm8j_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
K	d2bm8k_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
L	d2bm8l_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
D	d2bm8d_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)
B	d2bm8b_	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	CmcI-like	Cephalosporin hydroxylase CmcI	(Streptomyces clavuligerus ) [TaxId: 1901 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CmcI-like	8025953	4003165	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8038332	3000118	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RMNT_CmcI	e2bm8A1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: RMNT_CmcI	ECOD (v294.1)
C	Methyltrans_SAM, Methyltransf_25	e2bm8C1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
E	Methyltrans_SAM, Methyltransf_25	e2bm8E1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
F	Methyltrans_SAM, Methyltransf_25	e2bm8F1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
G	Methyltrans_SAM, Methyltransf_25	e2bm8G1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
H	Methyltrans_SAM, Methyltransf_25	e2bm8H1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
I	Methyltrans_SAM, Methyltransf_25	e2bm8I1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
J	Methyltrans_SAM, Methyltransf_25	e2bm8J1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
K	Methyltrans_SAM, Methyltransf_25	e2bm8K1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
L	Methyltrans_SAM, Methyltransf_25	e2bm8L1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
D	Methyltrans_SAM, Methyltransf_25	e2bm8D1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)
B	Methyltrans_SAM, Methyltransf_25	e2bm8B1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Methyltrans_SAM, Methyltransf_25	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
C	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
E	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
F	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
G	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
H	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
I	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
J	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
K	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
L	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
D	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
B	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF04989	Rhamnosyl O-methyltransferase/CmcI (RMNT_CmcI)	Rhamnosyl O-methyltransferase/CmcI	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	CEPHALOSPORIN HYDROXYLASE CMCI	transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR007072	Rhamnosyl O-methyltransferase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.