2GB0
Monomeric sarcosine oxidase: structure of a covalently flavinylated amine oxidizing enzyme
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2gb0a1 | Alpha and beta proteins (a/b) | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | FAD-linked reductases, N-terminal domain | Sarcosine oxidase | (Bacillus sp. B-0618 ) [TaxId: 69000 ], | SCOPe (2.08) |
A | d2gb0a2 | Alpha and beta proteins (a+b) | FAD-linked reductases, C-terminal domain | FAD-linked reductases, C-terminal domain | D-aminoacid oxidase-like | Sarcosine oxidase | (Bacillus sp. B-0618 ) [TaxId: 69000 ], | SCOPe (2.08) |
B | d2gb0b1 | Alpha and beta proteins (a/b) | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | FAD-linked reductases, N-terminal domain | Sarcosine oxidase | (Bacillus sp. B-0618 ) [TaxId: 69000 ], | SCOPe (2.08) |
B | d2gb0b2 | Alpha and beta proteins (a+b) | FAD-linked reductases, C-terminal domain | FAD-linked reductases, C-terminal domain | D-aminoacid oxidase-like | Sarcosine oxidase | (Bacillus sp. B-0618 ) [TaxId: 69000 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | solA | e2gb0A1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: solA | ECOD (1.6) |
A | DAO_1st | e2gb0A2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: DAO_1st | ECOD (1.6) |
B | solA | e2gb0B1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: solA | ECOD (1.6) |
B | DAO_1st | e2gb0B2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: DAO_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
A | 3.30.9.10 | Alpha Beta | 2-Layer Sandwich | D-Amino Acid Oxidase | Chain A, domain 2 | CATH (4.3.0) |
B | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
B | 3.30.9.10 | Alpha Beta | 2-Layer Sandwich | D-Amino Acid Oxidase | Chain A, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01266 | FAD dependent oxidoreductase (DAO) | FAD dependent oxidoreductase | This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045170 | MTOX family | Family | |
IPR006281 | Sarcosine oxidase, monomeric | Family | |
IPR006076 | FAD dependent oxidoreductase | Domain | |
IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
sarcosine oxidase M-CSA #113 | Monomeric sarcosine oxidase (MSOX) catalyses the oxidative demethylation of sarcosine (N-methylglycine) to form glycine and formaldehyde. Sarcosine is a common soil metabolite that can act as the sole source of carbon and energy for many microorganisms capable of expressing sarcosine oxidase. | Defined by 7 residues: HIS:B-45THR:B-48ARG:B-49LYS:B-265HIS:B-269CYS:B-315LYS:B-348 | EC: 1.5.3.1 (PDB Primary Data) |