2H7O
Crystal structure of the Rho-GTPase binding domain of YpkA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Rac1-binding domain-like | 8045273 | 4004385 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Rac1-binding domain structural repeat-like | 8089926 | 3002403 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Rac1-binding domain structural repeat-like | 8089924 | 3002403 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Rac1-binding domain structural repeat-like | 8089925 | 3002403 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rac1 | e2h7oA4 | A: alpha bundles | X: Yersinia protein kinase A (YpkA) Rho-GTPase binding domain (From Topology) | H: Yersinia protein kinase A (YpkA) Rho-GTPase binding domain (From Topology) | T: Yersinia protein kinase A (YpkA) Rho-GTPase binding domain | F: Rac1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.1330 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Rac1-binding domain, N-terminal GTPase binding subdomain | CATH (4.3.0) |
A | 1.20.58.1230 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09632 | Rac1-binding domain (Rac1) | Rac1-binding domain | The Rac1-binding domain is the C-terminal portion of YpkA from Yersinia. It is an all-helical molecule consisting of two distinct subdomains connected by a linker. the N-terminal end, residues 434-615, consists of six helices organised into two three ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019093 | YpkA, Rac1-binding domain | Domain | |
IPR043120 | Rac1-binding domain, N-terminal | Homologous Superfamily | |
IPR000719 | Protein kinase domain | Domain | |
IPR003547 | Serine/threonine protein kinase, yersinia-type | Family | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR008271 | Serine/threonine-protein kinase, active site | Active Site | |
IPR043119 | Rac1-binding domain, C-terminal | Homologous Superfamily |