Structure of protoporphyrinogen oxidase from Myxococcus xanthus with acifluorfen
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d2ivdb1 | Alpha and beta proteins (a/b) | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | FAD-linked reductases, N-terminal domain | Protoporphyrinogen oxidase | (Myxococcus xanthus ) [TaxId: 34 ], | SCOPe (2.08) |
| B | d2ivdb2 | Alpha and beta proteins (a+b) | FAD-linked reductases, C-terminal domain | FAD-linked reductases, C-terminal domain | L-aminoacid/polyamine oxidase | Protoporphyrinogen oxidase | (Myxococcus xanthus ) [TaxId: 34 ], | SCOPe (2.08) |
| A | d2ivda1 | Alpha and beta proteins (a/b) | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | FAD-linked reductases, N-terminal domain | Protoporphyrinogen oxidase | (Myxococcus xanthus ) [TaxId: 34 ], | SCOPe (2.08) |
| A | d2ivda2 | Alpha and beta proteins (a+b) | FAD-linked reductases, C-terminal domain | FAD-linked reductases, C-terminal domain | L-aminoacid/polyamine oxidase | Protoporphyrinogen oxidase | (Myxococcus xanthus ) [TaxId: 34 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | e2ivdB1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: NTP_transf_2, PAP_NTPase | F: | ECOD (20:10:01) | |
| B | e2ivdB2 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Methyltransf_2 | F: | ECOD (20:10:01) | |
| A | e2ivdA1 | A: FAD-linked reductases, C-terminal domain-like | X: FAD-linked reductases-C | H: FAD-linked reductases-C | T: Amino_oxidase | F: | ECOD (20:10:01) | |
| A | e2ivdA2 | A: Rossmann-like | X: Rossmann-related | H: FAD/NAD(P)-binding domain | T: | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
| B | 3.90.660.20 | Alpha Beta | Alpha-Beta Complex | Polyamine Oxidase | Chain A, domain 2 | CATH (4.3.0) |
| B | 1.10.3110.10 | Mainly Alpha | Orthogonal Bundle | protoporphyrinogen ix oxidase, domain 3 | protoporphyrinogen ix oxidase, domain 3 | CATH (4.3.0) |
| A | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
| A | 3.90.660.20 | Alpha Beta | Alpha-Beta Complex | Polyamine Oxidase | Chain A, domain 2 | CATH (4.3.0) |
| A | 1.10.3110.10 | Mainly Alpha | Orthogonal Bundle | protoporphyrinogen ix oxidase, domain 3 | protoporphyrinogen ix oxidase, domain 3 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR002937 | Amine oxidase | Domain | |
| IPR050464 | Zeta Carotene Desaturase and Related Oxidoreductases | Family | |
| IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily | |
| IPR004572 | Protoporphyrinogen oxidase | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Bitopic proteins | Bitopic proteins with NAD(P)-binding Rossmann-fold domains | Flavin containing amine oxidoreductase |
