The structure of the type III effector AvrB complexed with ADP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d2nuna_ | Multi-domain proteins (alpha and beta) | Antivirulence factor | Antivirulence factor | Antivirulence factor | Type III effector AvrB | (Pseudomonas savastanoi pv. glycinea ) [TaxId: 318 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | e2nunA1 | A: alpha bundles | X: EGF-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (develop294) | |
| A | NIR_SIR | e2nunA2 | A: alpha bundles | X: EGF-like | H: LDL receptor-like module | T: LDL receptor-like module | F: NIR_SIR | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 1.10.3290.20 | Mainly Alpha | Orthogonal Bundle | Fic-like fold | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Avirulence B protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR053495 | Avirulence B/C-like | Family | |
| IPR008798 | Avirulence B/C | Family | |
| IPR036231 | Avirulence B/C superfamily | Homologous Superfamily |
