2PU5 | pdb_00002pu5

Crystal Structure of a C-C bond hydrolase, BphD, from Burkholderia xenovorans LB400

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2pu5b_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Carbon-carbon bond hydrolase	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD)	(Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ],	SCOPe (2.08)
A	d2pu5a_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Carbon-carbon bond hydrolase	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD)	(Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	alpha/beta-Hydrolases	8036852	3000102	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	alpha/beta-Hydrolases	8036852	3000102	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Biopterin_H	e2pu5B1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (develop294)
A	Biopterin_H	e2pu5A1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
A	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00561	alpha/beta hydrolase fold (Abhydrolase_1)	alpha/beta hydrolase fold	This catalytic domain is found in a very wide range of enzymes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	2-hydroxy-6-oxonona-2,4-dienedioate hydrolase activity hydrolase activity, acting on carbon-carbon bonds hydrolase activity, acting on carbon-carbon bonds, in ketonic substances hydrolase activity catalytic activity hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity monoacylglycerol lipase activity lipase activity 2,6-dioxo-6-phenylhexa-3-enoate hydrolase activity	neutral lipid metabolic process lipid catabolic process catabolic process neutral lipid catabolic process glycerolipid catabolic process acylglycerol catabolic process primary metabolic process metabolic process cellular process glycerolipid metabolic process acylglycerol metabolic process lipid metabolic process biphenyl catabolic process cellular response to stimulus neutral lipid metabolic process lipid catabolic process catabolic process neutral lipid catabolic process glycerolipid catabolic process acylglycerol catabolic process primary metabolic process metabolic process cellular process glycerolipid metabolic process acylglycerol metabolic process lipid metabolic process biphenyl catabolic process cellular response to stimulus benzene-containing compound metabolic process response to stimulus cellular response to xenobiotic stimulus biphenyl metabolic process xenobiotic catabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000639	Epoxide hydrolase-like	Family
A, B	IPR000073	Alpha/beta hydrolase fold-1	Domain
A, B	IPR017727	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, BphD	Family
A, B	IPR050266	AB hydrolase superfamily	Family
A, B	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.