2QZ4 | pdb_00002qz4

Human paraplegin, AAA domain in complex with ADP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2qz4a1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2qz4a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2qz4A2	A: Profilin-like	X: sensor domains	H: sensor domains	T: PDZ	F:	ECOD (20:10:01)
A		e2qz4A3	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	1.10.8.60	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF17862	AAA+ lid domain (AAA_lid_3)	AAA+ lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
A	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Paraplegin	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity metalloendopeptidase activity metallopeptidase activity endopeptidase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity metalloendopeptidase activity metallopeptidase activity endopeptidase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding ATP-dependent peptidase activity	primary metabolic process gene expression macromolecule biosynthetic process protein maturation mitochondrial protein processing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process cellular localization anterograde axonal transport primary metabolic process gene expression macromolecule biosynthetic process protein maturation mitochondrial protein processing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process cellular localization anterograde axonal transport transport intracellular transport axonal transport establishment of localization localization axo-dendritic transport establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process regulation of calcium ion transport regulation of localization regulation of cellular process monoatomic ion transmembrane transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport monoatomic cation transmembrane transport regulation of calcium ion transmembrane transport regulation of calcium import into the mitochondrion monoatomic ion transport calcium import into the mitochondrion monoatomic cation transport regulation of metal ion transport regulation of biological process regulation of transport regulation of monoatomic ion transport biological regulation transmembrane transport regulation of transmembrane transport mitochondrial calcium ion transmembrane transport regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development regulation of membrane permeability regulation of biological quality regulation of mitochondrial membrane permeability positive regulation of mitochondrial membrane permeability positive regulation of membrane permeability cell death mitochondrial outer membrane permeabilization involved in programmed cell death programmed cell death	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial protein-containing complex protein-containing complex catalytic complex peptidase complex membrane protein complex inner mitochondrial membrane protein complex m-AAA complex mitochondrial permeability transition pore complex pore complex neuron projection cytoplasm axon cell projection axon cytoplasm neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000642	Peptidase M41	Domain
A	IPR011546	Peptidase M41, FtsH extracellular	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR003959	ATPase, AAA-type, core	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR037219	Peptidase M41-like	Homologous Superfamily
A	IPR041569	AAA ATPase, AAA+ lid domain	Domain
A	IPR050928	ATP-dependent Zinc Metalloprotease	Family
A	IPR005936	ATP-dependent zinc metalloprotease, FtsH	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9UQ90	hereditary spastic paraplegia 7 paraplegia osteogenesis imperfecta hereditary spastic paraplegia neurodegenerative disease pancreatic intraductal papillary-mucinous carcinoma Paraplegia, Ataxic 16q24.3 microdeletion syndrome attention deficit hyperactivity disorder, inattentive type progressive external ophthalmoplegia Charcot-Marie-Tooth disease lateral sclerosis malignant glioma oligodendroglioma osteosarcoma hereditary spastic paraplegia 7 paraplegia osteogenesis imperfecta hereditary spastic paraplegia neurodegenerative disease pancreatic intraductal papillary-mucinous carcinoma Paraplegia, Ataxic 16q24.3 microdeletion syndrome attention deficit hyperactivity disorder, inattentive type progressive external ophthalmoplegia Charcot-Marie-Tooth disease lateral sclerosis malignant glioma oligodendroglioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor Pick disease atypical teratoid rhabdoid tumor skin basal cell carcinoma glioblastoma intellectual disability leukodystrophy medulloblastoma mucopolysaccharidosis type 4 osteochondrodysplasia ovarian cancer primary lateral sclerosis, adult, 1 cancer large cell medulloblastoma malignant ependymoma melanoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.