2R1G | pdb_00002r1g

Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
I [auth H]	d2r1gh1	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Ribosome complexes	70S ribosome functional complex	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
H [auth G]	d2r1gg1	Alpha and beta proteins (a+b)	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Translational machinery components	Ribosomal protein S9	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
J [auth I]	d2r1gi1	All alpha proteins	S13-like H2TH domain	S13-like H2TH domain	Ribosomal protein S13	Ribosomal protein S13	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth H]	SCOP2B Superfamily	Nucleic acid-binding proteins	8098824	3000135	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8093728	3000100	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	S13-like H2TH domain	8098854	3000053	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth H]	Me-amine-dh_H	e2r1gH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Me-amine-dh_H	ECOD (develop294)
H [auth G]	FlaF_Ig-like	e2r1gG1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (develop294)
J [auth I]	Cellulase	e2r1gI1	A: alpha bundles	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: Cellulase	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth H]	30S ribosomal protein S12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
H [auth G]	30S ribosomal protein S9	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
G [auth F]	16S RIBOSOMAL RNA HELIX 45	-	-	-
F [auth X]	16S RIBOSOMAL RNA HELIX 44	-	-	-
E	16S RIBOSOMAL RNA HELIX 44	-	-	-
D	16S RIBOSOMAL RNA HELIX 28	-	-	-
C	16S RIBOSOMAL RNA HELIX 27	-	-	-
B	16S RIBOSOMAL RNA HELIX 18	-	-	-
J [auth I]	30S ribosomal protein S13	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
A	16S RIBOSOMAL RNA HELIX 1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth H]	IPR006032	Small ribosomal subunit protein uS12	Family
I [auth H]	IPR005679	Ribosomal protein uS12, bacteria	Family
I [auth H]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
H [auth G]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
H [auth G]	IPR023035	Small ribosomal subunit protein uS9, bacteria/plastid	Family
H [auth G]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
H [auth G]	IPR000754	Small ribosomal subunit protein uS9	Family
H [auth G]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
J [auth I]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
J [auth I]	IPR001892	Small ribosomal subunit protein uS13	Family
J [auth I]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
J [auth I]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
J [auth I]	IPR019980	Small ribosomal subunit protein uS13, bacteria	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.