2RIR | pdb_00002rir

Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8095910	3000044	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8095910	3000044	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8095910	3000044	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8095910	3000044	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8095910	3000044	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8095910	3000044	SCOP2B (2022-06-29)
B	SCOP2 Family	Dipicolinate synthase A chain-like	8046347	4005035	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	D-2-hydroxyacid dehydrogenase-like	8095910	3000044	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8095910	3000044	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H		e2rirH1	A: Ntn/PP2C	X: Ntn	H: Penicillin acylase, catalytic domain	T: Thaumatin	F:	ECOD (20:10:01)
G		e2rirG1	A: Ntn/PP2C	X: Ntn	H: Penicillin acylase, catalytic domain	T: Thaumatin	F:	ECOD (20:10:01)
F		e2rirF1	A: Ntn/PP2C	X: Ntn	H: Penicillin acylase, catalytic domain	T: Thaumatin	F:	ECOD (20:10:01)
E		e2rirE1	A: Arterivirus nucleocapsid protein	X: Arterivirus nucleocapsid protein	H: Arterivirus nucleocapsid protein	T: AlaDh_PNT_C	F:	ECOD (20:10:01)
D		e2rirD1	A: Ntn/PP2C	X: Ntn	H: Penicillin acylase, catalytic domain	T: Thaumatin	F:	ECOD (20:10:01)
C		e2rirC1	A: Ntn/PP2C	X: Ntn	H: Penicillin acylase, catalytic domain	T: Thaumatin	F:	ECOD (20:10:01)
B		e2rirB1	A: Ntn/PP2C	X: Ntn	H: Penicillin acylase, catalytic domain	T: Thaumatin	F:	ECOD (20:10:01)
A		e2rirA1	A: Ntn/PP2C	X: Ntn	H: Penicillin acylase, catalytic domain	T: Thaumatin	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF16924	Dipicolinate synthase subunit A N-terminal domain (DpaA_N)	Dipicolinate synthase subunit A N-terminal domain		Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF01262	Alanine dehydrogenase/PNT, C-terminal domain (AlaDh_PNT_C)	Alanine dehydrogenase/PNT, C-terminal domain	This family now also contains the lysine 2-oxoglutarate reductases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Dipicolinate synthase, A chain	oxidoreductase activity catalytic activity	sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR031629	Dipicolinate synthase subunit A, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR014215	Dipicolinic acid synthetase subunit A	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007698	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.