2UUB | pdb_00002uub

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2uubh1	Alpha and beta proteins (a+b)	Ribosomal protein S8	Ribosomal protein S8	Ribosomal protein S8	Ribosomal protein S8	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
G	d2uubg1	All alpha proteins	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
F	d2uubf1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ribosomal protein S6	Ribosomal protein S6	Ribosomal protein S6	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
E	d2uube1	Alpha and beta proteins (a+b)	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Translational machinery components	Ribosomal protein S5, C-terminal domain	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
E	d2uube2	Alpha and beta proteins (a+b)	dsRBD-like	dsRNA-binding domain-like	Ribosomal S5 protein, N-terminal domain	Ribosomal S5 protein, N-terminal domain	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
D	d2uubd1	Alpha and beta proteins (a+b)	Alpha-L RNA-binding motif	Alpha-L RNA-binding motif	Ribosomal protein S4 (bacteria)	Ribosomal protein S4	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
C	d2uubc1	Alpha and beta proteins (a+b)	Alpha-lytic protease prodomain-like	Prokaryotic type KH domain (KH-domain type II)	Prokaryotic type KH domain (KH-domain type II)	Ribosomal protein S3 N-terminal domain	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
C	d2uubc2	Alpha and beta proteins (a+b)	Ribosomal protein S3 C-terminal domain	Ribosomal protein S3 C-terminal domain	Ribosomal protein S3 C-terminal domain	Ribosomal protein S3 C-terminal domain	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
U	d2uubu1	Peptides	Arg-rich RNA binding peptides	30S ribosomal protein THX	30S ribosomal protein THX	30S ribosomal protein THX	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
T	d2uubt1	All alpha proteins	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20	Ribosomal protein S20	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
B	d2uubb1	Alpha and beta proteins (a/b)	Flavodoxin-like	Ribosomal protein S2	Ribosomal protein S2	Ribosomal protein S2	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
S	d2uubs1	Alpha and beta proteins (a+b)	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
R	d2uubr1	All alpha proteins	DNA/RNA-binding 3-helical bundle	Ribosomal protein S18	Ribosomal protein S18	Ribosomal protein S18	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
Q	d2uubq1	All beta proteins	OB-fold	Nucleic acid-binding proteins	Cold shock DNA-binding domain-like	Ribosomal protein S17	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
P	d2uubp1	Alpha and beta proteins (a+b)	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
O	d2uubo1	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	Ribosomal protein S15	Ribosomal protein S15	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
N	d2uubn1	Small proteins	Glucocorticoid receptor-like (DNA-binding domain)	Glucocorticoid receptor-like (DNA-binding domain)	Ribosomal protein S14	Ribosomal protein S14	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
M	d2uubm1	All alpha proteins	S13-like H2TH domain	S13-like H2TH domain	Ribosomal protein S13	Ribosomal protein S13	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
L	d2uubl1	All beta proteins	OB-fold	Nucleic acid-binding proteins	Cold shock DNA-binding domain-like	Ribosomal protein S12	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
K	d2uubk1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Translational machinery components	Ribosomal protein L18 and S11	Ribosomal protein S11	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
J	d2uubj1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ribosomal protein S10	Ribosomal protein S10	Ribosomal protein S10	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8037678	3000100	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ribosomal protein S7	8033523	3000799	SCOP2B (2022-06-29)
E	SCOP2 Family	Translational machinery components	8031637	4000951	SCOP2 (2022-06-29)
E	SCOP2 Family	Ribosomal S5 protein, N-terminal domain	8031639	4001180	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	Ribosomal protein S5 domain 2-like	8044015	3000100	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	dsRNA-binding domain-like	8044017	3000985	SCOP2 (2022-06-29)
D	SCOP2 Family	Ribosomal protein S4	8031636	4001399	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Alpha-L RNA-binding motif	8044014	3001473	SCOP2 (2022-06-29)
C	SCOP2 Family	Prokaryotic type KH domain (KH-domain type II)	8031633	4001200	SCOP2 (2022-06-29)
C	SCOP2 Family	Ribosomal protein S3 C-terminal domain	8031634	4001203	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Prokaryotic type KH domain (KH-domain type II)	8044011	3001043	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Ribosomal protein S3 C-terminal domain	8044012	3001053	SCOP2 (2022-06-29)
T	SCOP2 Family	Ribosomal protein S20	8031651	4000787	SCOP2 (2022-06-29)
T	SCOP2 Superfamily	Ribosomal protein S20	8044029	3001362	SCOP2 (2022-06-29)
B	SCOP2 Family	Ribosomal protein S2-like	8031632	4003744	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	SIS domain/Ribosomal protein S2-like	8044010	3001397	SCOP2 (2022-06-29)
S	SCOP2 Family	Ribosomal protein S19	8031649	4001081	SCOP2 (2022-06-29)
S	SCOP2 Superfamily	Ribosomal protein S19	8044027	3000686	SCOP2 (2022-06-29)
R	SCOP2 Family	Ribosomal protein S18	8031650	4000735	SCOP2 (2022-06-29)
R	SCOP2 Superfamily	Ribosomal protein S18	8044028	3001191	SCOP2 (2022-06-29)
Q	SCOP2 Family	Cold shock DNA-binding domain-like	8031648	4001909	SCOP2 (2022-06-29)
Q	SCOP2 Superfamily	Nucleic acid-binding proteins	8044026	3000135	SCOP2 (2022-06-29)
P	SCOP2 Family	Ribosomal protein S16	8031647	4001077	SCOP2 (2022-06-29)
P	SCOP2 Superfamily	Ribosomal protein S16	8044025	3000680	SCOP2 (2022-06-29)
N	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8052585	3000068	SCOP2B (2022-06-29)
M	SCOP2 Family	Ribosomal protein S13	8003706	4000260	SCOP2 (2022-06-29)
M	SCOP2 Superfamily	S13-like H2TH domain	8003708	3000053	SCOP2 (2022-06-29)
L	SCOP2 Family	Cold shock DNA-binding domain-like	8031643	4001909	SCOP2 (2022-06-29)
L	SCOP2 Superfamily	Nucleic acid-binding proteins	8044021	3000135	SCOP2 (2022-06-29)
K	SCOP2 Family	Ribosomal protein L18p and S11	8031642	4000555	SCOP2 (2022-06-29)
K	SCOP2 Superfamily	Translational machinery components	8044020	3000571	SCOP2 (2022-06-29)
J	SCOP2 Family	Ribosomal protein S10	8031641	4001240	SCOP2 (2022-06-29)
J	SCOP2 Superfamily	Ribosomal protein S10	8044019	3001336	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	e2uubI1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	T: FlaF_Ig-like	F:	ECOD (20:10:01)
H	e2uubH1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
G	e2uubG1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
F	e2uubF1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Propep_M14	F:	ECOD (20:10:01)
E	e2uubE1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
D	e2uubD1	A: beta-propeller-like	X: beta-propeller	H: Nucleic acid-binding protein	T: Cellulase	F:	ECOD (20:10:01)
C	e2uubC1	A: T-fold	X: Ribosomal protein S3-C	H: Ribosomal protein S3-C	T: Ribosomal_S3_C	F:	ECOD (20:10:01)
C	e2uubC2	A: Alpha-lytic protease prodomain-like	X: KH-domains	H: Prokaryotic type KH domain (KH-domain type II)	T: KH_2	F:	ECOD (20:10:01)
T	e2uubT1	A: Spectrin repeat-like	X: Ribosomal protein S20	H: Ribosomal protein S20	T: Ribosomal_S20p	F:	ECOD (20:10:01)
B	e2uubB1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	T: FlaF_Ig-like	F:	ECOD (20:10:01)
S	e2uubS1	A: beta-propeller-like	X: beta-propeller	H: Nucleic acid-binding protein	T: Cellulase	F:	ECOD (20:10:01)
R	e2uubR1	A: HTH	X: HTH	H: Three-helical HTH	T: Ribosomal_S18	F:	ECOD (20:10:01)
Q	e2uubQ1	A: beta-propeller-like	X: beta-propeller	H: PERK and Ire1 luminal domains	T:	F:	ECOD (20:10:01)
P	e2uubP1	A: Ribosomal protein S16	X: Ribosomal protein S16	H: Ribosomal protein S16	T: Ribosomal_S16	F:	ECOD (20:10:01)
O	e2uubO1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: IMS_HHH	F:	ECOD (20:10:01)
N	e2uubN1	A: Glucocorticoid receptor-like	X: LIM domain-like	H: LIM domain-like	T:	F:	ECOD (20:10:01)
M	e2uubM1	A: beta-propeller-like	X: beta-propeller	H: Nucleic acid-binding protein	T: Cellulase	F:	ECOD (20:10:01)
L	e2uubL1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleic acid-binding protein	T: Ribosom_S12_S23	F:	ECOD (20:10:01)
K	e2uubK1	A: Ribonuclease H-like	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribosomal_S11	F:	ECOD (20:10:01)
J	e2uubJ1	A: Alpha-beta plaits	X: Ribosomal protein S10	H: Ribosomal protein S10	T: Ribosomal_S10	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
I	3.30.230.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5	domain 2	CATH (4.3.0)
H	3.30.1370.30	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (4.3.0)
H	3.30.1490.10	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
G	1.10.455.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S7	Ribosomal protein S7/S5	CATH (4.3.0)
F	3.30.70.60	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Ribosomal protein S6/Translation elongation factor EF1B	CATH (4.3.0)
E	3.30.160.20	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)
E	3.30.230.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5	domain 2	CATH (4.3.0)
D	1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41	Chain A, domain 1	CATH (4.3.0)
D	3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region	Chain A	CATH (4.3.0)
C	3.30.300.20	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
C	3.30.1140.32	Alpha Beta	2-Layer Sandwich	Ribosomal protein S3 C-terminal domain	Ribosomal protein S3, C-terminal domain	CATH (4.3.0)
T	1.20.58.110	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B	3.40.50.10490	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glucose-6-phosphate isomerase like protein	CATH (4.3.0)
B	1.10.287.610	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
S	3.30.860.10	Alpha Beta	2-Layer Sandwich	30s Ribosomal Protein S19	Chain A	CATH (4.3.0)
R	4.10.640.10	Few Secondary Structures	Irregular	30s Ribosomal Protein S18	Ribosomal protein S18	CATH (4.3.0)
Q	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
P	3.30.1320.10	Alpha Beta	2-Layer Sandwich	S16 Ribosomal Protein	Chain: A	CATH (4.3.0)
O	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
N	4.10.830.10	Few Secondary Structures	Irregular	30s Ribosomal Protein S14	Chain N	CATH (4.3.0)
M	1.10.8.50	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
M	4.10.910.10	Few Secondary Structures	Irregular	30s ribosomal protein s13	domain 2	CATH (4.3.0)
L	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
K	3.30.420.80	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
J	3.30.70.600	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Ribosomal protein S10	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
H	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8		Domain
G	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
F	PF01250	Ribosomal protein S6 (Ribosomal_S6)	Ribosomal protein S6		Domain
E	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain		Domain
E	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain		Domain
D	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
D	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
C	PF07650	KH domain (KH_2)	KH domain		Domain
C	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
B	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
S	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19		Domain
R	PF01084	Ribosomal protein S18 (Ribosomal_S18)	Ribosomal protein S18	-	Family
Q	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17		Domain
P	PF00886	Ribosomal protein S16 (Ribosomal_S16)	Ribosomal protein S16	-	Family
O	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15		Domain
N	PF00253	Ribosomal protein S14p/S29e (Ribosomal_S14)	Ribosomal protein S14p/S29e	-	Family
M	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
L	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	This protein is known as S12 in bacteria and archaea and S23 in eukaryotes.	Domain
K	PF00411	Ribosomal protein S11 (Ribosomal_S11)	Ribosomal protein S11	-	Family
J	PF00338	Ribosomal protein S10p/S20e (Ribosomal_S10)	Ribosomal protein S10p/S20e	This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I	30S RIBOSOMAL PROTEIN S9	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
H	30S RIBOSOMAL PROTEIN S8	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
G	30S RIBOSOMAL PROTEIN S7	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
F	30S RIBOSOMAL PROTEIN S6	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
E	30S RIBOSOMAL PROTEIN S5	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
D	30S RIBOSOMAL PROTEIN S4	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding RNA binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
C	30S RIBOSOMAL PROTEIN S3	RNA binding binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
W [auth Y]	5'-R(CPCPUPCPCPCPUPCM0PAPCP6MZPAP GPGPAPGP*G)-3'	-	-	-
V [auth X]	5'-R(GPUPUPAPAPAP)-3'	-	-	-
U	30S RIBOSOMAL PROTEIN THX	RNA binding binding rRNA binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
T	30S RIBOSOMAL PROTEIN S20	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
B	30S RIBOSOMAL PROTEIN S2	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
S	30S RIBOSOMAL PROTEIN S19	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
R	30S RIBOSOMAL PROTEIN S18	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
Q	30S RIBOSOMAL PROTEIN S17	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
P	30S RIBOSOMAL PROTEIN S16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
O	30S RIBOSOMAL PROTEIN S15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
N	30S RIBOSOMAL PROTEIN S14	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
M	30S RIBOSOMAL PROTEIN S13	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
L	30S RIBOSOMAL PROTEIN S12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
K	30S RIBOSOMAL PROTEIN S11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
J	30S RIBOSOMAL PROTEIN S10	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
A	16S Ribosomal RNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
I	IPR023035	Small ribosomal subunit protein uS9, bacteria/plastid	Family
I	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
I	IPR000754	Small ribosomal subunit protein uS9	Family
I	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
H	IPR000630	Small ribosomal subunit protein uS8	Family
H	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
H	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
G	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
G	IPR000235	Small ribosomal subunit protein uS7	Family
G	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
G	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
G	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
F	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
F	IPR000529	Small ribosomal subunit protein bS6	Family
F	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
F	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
F	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
E	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
E	IPR000851	Small ribosomal subunit protein uS5	Family
E	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
E	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
E	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
E	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
D	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
D	IPR002942	RNA-binding S4 domain	Domain
D	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
D	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
D	IPR022801	Small ribosomal subunit protein uS4	Family
D	IPR005709	Small ribosomal subunit protein uS4, bacteria	Family
C	IPR005704	Small ribosomal subunit protein uS3, bacteria	Family
C	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
C	IPR057258	Small ribosomal subunit protein uS3	Family
C	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
C	IPR004087	K Homology domain	Domain
C	IPR004044	K Homology domain, type 2	Domain
C	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
C	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
C	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
U	IPR030826	Small ribosomal subunit protein bTHX/bTHXc/bTHXm	Family
U	IPR031414	Small ribosomal subunit protein bTHX	Family
T	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
T	IPR002583	Small ribosomal subunit protein bS20	Family
B	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
B	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
B	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
B	IPR001865	Small ribosomal subunit protein uS2	Family
S	IPR005732	Small ribosomal subunit protein uS19, bacteria	Family
S	IPR002222	Small ribosomal subunit protein uS19	Family
S	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
S	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
R	IPR001648	Small ribosomal subunit protein bS18	Family
R	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
R	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
Q	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
Q	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
Q	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
Q	IPR000266	Small ribosomal subunit protein uS17	Family
P	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
P	IPR000307	Small ribosomal subunit protein bS16	Family
O	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
O	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
O	IPR000589	Small ribosomal subunit protein uS15	Family
N	IPR023053	Small ribosomal subunit protein uS14, bacteria	Family
N	IPR001209	Small ribosomal subunit protein uS14	Family
N	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
N	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
M	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
M	IPR001892	Small ribosomal subunit protein uS13	Family
M	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
M	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
M	IPR019980	Small ribosomal subunit protein uS13, bacteria	Family
L	IPR006032	Small ribosomal subunit protein uS12	Family
L	IPR005679	Ribosomal protein uS12, bacteria	Family
L	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
K	IPR001971	Small ribosomal subunit protein uS11	Family
K	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
K	IPR019981	Small ribosomal subunit protein uS11, bacteria	Family
K	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
J	IPR001848	Small ribosomal subunit protein uS10	Family
J	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
J	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
J	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site