2VRF | pdb_00002vrf

CRYSTAL STRUCTURE OF THE HUMAN BETA-2-SYNTROPHIN PDZ DOMAIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2vrfd1	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d2vrfd3	Artifacts	Tags	Tags	Tags	C-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d2vrfd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2vrfc1	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2vrfc3	Artifacts	Tags	Tags	Tags	C-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2vrfc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2vrfb1	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2vrfb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2vrfb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2vrfa1	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2vrfa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2vrfa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e2vrfD1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Redoxin	F:	ECOD (20:10:01)
C		e2vrfC1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Redoxin	F:	ECOD (20:10:01)
B		e2vrfB1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Redoxin	F:	ECOD (20:10:01)
A		e2vrfA1	A: Profilin-like	X: sensor domains	H: sensor domains	T: HHA	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
C	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
B	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	BETA-2-SYNTROPHIN	RNA binding binding nucleic acid binding cytoskeletal protein binding actin binding protein binding calmodulin binding structural molecule activity	-	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction membrane ciliary transition zone membrane-bounded organelle cell projection organelle cilium plasma membrane bounded cell projection intracellular anatomical structure intracellular membraneless organelle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction membrane ciliary transition zone membrane-bounded organelle cell projection organelle cilium plasma membrane bounded cell projection intracellular anatomical structure intracellular membraneless organelle intracellular organelle centrosome microtubule organizing center cytoskeleton centriolar satellite membraneless organelle microtubule cytoskeleton cytoplasm cytosol cell periphery plasma membrane nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex glycoprotein complex plasma membrane protein complex membrane protein complex dystrophin-associated glycoprotein complex Golgi apparatus endomembrane system synapse transport vesicle intracellular vesicle transport vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle organelle membrane ciliary basal body polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001849	Pleckstrin homology domain	Domain
A, B, C, D	IPR015482	Syntrophin	Family
A, B, C, D	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR055108	Syntrophin, C-terminal PH domain	Domain
A, B, C, D	IPR036034	PDZ superfamily	Homologous Superfamily
A, B, C, D	IPR041428	Syntrophin, split Pleckstrin homology (PH) domain	Domain
A, B, C, D	IPR001478	PDZ domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q13425	adenoma Emery-Dreifuss muscular dystrophy invasive ductal breast carcinoma malignant ependymoma oligodendroglioma polycystic ovary syndrome astrocytic tumor gastric cancer juvenile dermatomyositis malignant pancreatic neoplasm ovarian cancer ductal breast carcinoma in situ gastric carcinoma large cell medulloblastoma MALT lymphoma adenoma Emery-Dreifuss muscular dystrophy invasive ductal breast carcinoma malignant ependymoma oligodendroglioma polycystic ovary syndrome astrocytic tumor gastric cancer juvenile dermatomyositis malignant pancreatic neoplasm ovarian cancer ductal breast carcinoma in situ gastric carcinoma large cell medulloblastoma MALT lymphoma pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.