2W2F | pdb_00002w2f

CRYSTAL STRUCTURE OF SINGLE POINT MUTANT ARG48GLN OF P-COUMARIC ACID DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM STRUCTURAL INSIGHTS INTO THE ACTIVE SITE AND DECARBOXYLATION CATALYTIC MECHANISM

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd2w2fd_ All beta proteins Lipocalins Lipocalins Phenolic acid decarboxylase (PAD) automated matches (Lactiplantibacillus plantarum ) [TaxId: 1590 ], SCOPe (2.08)
Cd2w2fc_ All beta proteins Lipocalins Lipocalins Phenolic acid decarboxylase (PAD) automated matches (Lactiplantibacillus plantarum ) [TaxId: 1590 ], SCOPe (2.08)
Bd2w2fb_ All beta proteins Lipocalins Lipocalins Phenolic acid decarboxylase (PAD) automated matches (Lactiplantibacillus plantarum ) [TaxId: 1590 ], SCOPe (2.08)
Ad2w2fa_ All beta proteins Lipocalins Lipocalins Phenolic acid decarboxylase (PAD) automated matches (Lactiplantibacillus plantarum ) [TaxId: 1590 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyLipocalins 8041828 3001332 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyLipocalins 8041828 3001332 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLipocalins 8041828 3001332 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLipocalins 8041828 3001332 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DRVPe2w2fD1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (develop294)
CRVPe2w2fC1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (develop294)
BRVPe2w2fB1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (develop294)
ARVPe2w2fA1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.40.128.20 Mainly Beta Beta Barrel Lipocalin Calycin beta-barrel core domainCATH (4.3.0)
C2.40.128.20 Mainly Beta Beta Barrel Lipocalin Calycin beta-barrel core domainCATH (4.3.0)
B2.40.128.20 Mainly Beta Beta Barrel Lipocalin Calycin beta-barrel core domainCATH (4.3.0)
A2.40.128.20 Mainly Beta Beta Barrel Lipocalin Calycin beta-barrel core domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF05870Phenolic acid decarboxylase (PAD) (PA_decarbox)Phenolic acid decarboxylase (PAD)This family consists of several bacterial phenolic acid decarboxylase proteins. Phenolic acids, also called substituted cinnamic acids, are important lignin-related aromatic acids and natural constituents of plant cell walls. These acids (particularl ...This family consists of several bacterial phenolic acid decarboxylase proteins. Phenolic acids, also called substituted cinnamic acids, are important lignin-related aromatic acids and natural constituents of plant cell walls. These acids (particularly ferulic, p-coumaric, and caffeic acids) bind the complex lignin polymer to the hemicellulose and cellulose in plants. The Phenolic acid decarboxylase (PAD) gene (pad) is transcriptionally regulated by p-coumaric, ferulic, or caffeic acid; these three acids are the three substrates of PAD [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
P-COUMARIC ACID DECARBOXYLASE - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR012674CalycinHomologous Superfamily
A, B, C, D
IPR008729Phenolic acid decarboxylaseFamily