2WG5 | pdb_00002wg5

Proteasome-Activating Nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2B (2022-06-29)
A	SCOP2 Family	Arc OB C-terminal domain-like	8091040	4004561	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HypC/PAN OB-fold domain-like	8091041	3000354	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Methyltransf_25	e2wg5L1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
K	Methyltransf_25	e2wg5K1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
J	Methyltransf_25	e2wg5J1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
I	Methyltransf_25	e2wg5I1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
H	Methyltransf_25	e2wg5H1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
G	Methyltransf_25	e2wg5G1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
F	Methyltransf_25	e2wg5F1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
E	Methyltransf_25	e2wg5E1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
D	Methyltransf_25	e2wg5D1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
C	Methyltransf_25	e2wg5C1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
B	Methyltransf_25	e2wg5B1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Methyltransf_25	ECOD (develop294)
A	YadA_stalk	e2wg5A1	A: alpha bundles	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: YadA_stalk	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
L	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
J	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
J	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
I	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
I	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
F	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF16450	Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)	Proteasomal ATPase OB C-terminal domain	This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	GENERAL CONTROL PROTEIN GCN4, PROTEASOME-ACTIVATING NUCLEOTIDASE	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity TFIID-class transcription factor complex binding transcription factor binding basal transcription machinery binding protein-containing complex binding protein binding basal RNA polymerase II transcription machinery binding general transcription initiation factor binding RNA polymerase II general transcription initiation factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding DNA binding sequence-specific DNA binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding transcription regulator activity DNA-binding transcription factor activity mediator complex binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity identical protein binding	cellular process protein unfolding catabolic process proteasomal protein catabolic process metabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process response to nutrient levels response to stimulus response to stress response to amino acid starvation cellular process protein unfolding catabolic process proteasomal protein catabolic process metabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process response to nutrient levels response to stimulus response to stress response to amino acid starvation response to starvation cellular response to stimulus cellular response to nutrient levels positive regulation of cellular response to amino acid starvation regulation of response to nutrient levels regulation of cellular process positive regulation of biological process regulation of cellular response to stress cellular response to amino acid starvation positive regulation of response to stimulus cellular response to stress regulation of response to stress positive regulation of cellular process regulation of biological process biological regulation cellular response to starvation regulation of response to stimulus regulation of cellular response to amino acid starvation positive regulation of response to nutrient levels transcription preinitiation complex assembly positive regulation of macromolecule biosynthetic process regulation of primary metabolic process cellular component biogenesis nucleobase-containing compound metabolic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process cellular component assembly transcription by RNA polymerase II positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process transcription initiation at RNA polymerase II promoter regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of DNA-templated transcription initiation positive regulation of RNA metabolic process regulation of gene expression biosynthetic process RNA polymerase II preinitiation complex assembly regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process regulation of RNA polymerase II transcription preinitiation complex assembly positive regulation of cellular component organization regulation of cellular component organization positive regulation of DNA-templated transcription RNA metabolic process cellular component organization protein-DNA complex organization RNA biosynthetic process nucleic acid biosynthetic process positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly positive regulation of biosynthetic process protein-containing complex assembly cellular component organization or biogenesis regulation of RNA biosynthetic process regulation of biosynthetic process positive regulation of RNA polymerase II transcription preinitiation complex assembly protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of transcription initiation by RNA polymerase II protein-DNA complex assembly regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression regulation of cellular component biogenesis macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process positive regulation of RNA biosynthetic process regulation of transcription initiation by RNA polymerase II localization protein localization to organelle macromolecule localization protein localization to nuclear periphery protein localization to nucleus intracellular protein localization amino acid biosynthetic process amino acid metabolic process signaling signal transduction intracellular signal transduction cell communication negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process regulation of ribosomal protein gene transcription by RNA polymerase II negative regulation of ribosomal protein gene transcription by RNA polymerase II	proteasome accessory complex protein-containing complex intracellular anatomical structure cellular anatomical structure catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome-activating nucleotidase complex intracellular protein-containing complex cytoplasm RNA polymerase II transcription regulator complex membrane-bounded organelle nucleus proteasome accessory complex protein-containing complex intracellular anatomical structure cellular anatomical structure catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome-activating nucleotidase complex intracellular protein-containing complex cytoplasm RNA polymerase II transcription regulator complex membrane-bounded organelle nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050221	26S Proteasome Regulatory ATPase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR041569	AAA ATPase, AAA+ lid domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR032501	Proteasomal ATPase, second OB domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003593	AAA+ ATPase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003959	ATPase, AAA-type, core	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023501	Proteasome-activating nucleotidase PAN	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004827	Basic-leucine zipper domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050946	AP-1 Transcription Factor bZIP	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR046347	Basic-leucine zipper domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.