2WMK

Crystal structure of the catalytic module of a family 98 glycoside hydrolase from Streptococcus pneumoniae SP3-BS71 (Sp3GH98) in complex with the A-LewisY pentasaccharide blood group antigen.

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2wmka2 All beta proteins Hyaluronate lyase-like, C-terminal domain Glycosyl hydrolase family 98 C-terminal domain-like automated matches automated matches (Streptococcus pneumoniae SP3-BS71 ) [TaxId: 406556 ], SCOPe (2.08)
Ad2wmka1 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Streptococcus pneumoniae SP3-BS71 ) [TaxId: 406556 ], SCOPe (2.08)
Bd2wmkb2 All beta proteins Hyaluronate lyase-like, C-terminal domain Glycosyl hydrolase family 98 C-terminal domain-like automated matches automated matches (Streptococcus pneumoniae SP3-BS71 ) [TaxId: 406556 ], SCOPe (2.08)
Bd2wmkb1 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Streptococcus pneumoniae SP3-BS71 ) [TaxId: 406556 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGlyco_hydro_98C_Ce2wmkA1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Hyaluronate lyase-like, C-terminal domain (From Topology)T: Hyaluronate lyase-like, C-terminal domainF: Glyco_hydro_98C_CECOD (1.6)
AGlyco_hydro_98Me2wmkA3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Glyco_hydro_98MECOD (1.6)
AGlyco_hydro_98C_Ne2wmkA2 A: a/b three-layered sandwichesX: a/b domain in family 98 glycoside hydrolases (From Topology)H: a/b domain in family 98 glycoside hydrolases (From Topology)T: a/b domain in family 98 glycoside hydrolasesF: Glyco_hydro_98C_NECOD (1.6)
BGlyco_hydro_98C_Ce2wmkB1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Hyaluronate lyase-like, C-terminal domain (From Topology)T: Hyaluronate lyase-like, C-terminal domainF: Glyco_hydro_98C_CECOD (1.6)
BGlyco_hydro_98Me2wmkB3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Glyco_hydro_98MECOD (1.6)
BGlyco_hydro_98C_Ne2wmkB2 A: a/b three-layered sandwichesX: a/b domain in family 98 glycoside hydrolases (From Topology)H: a/b domain in family 98 glycoside hydrolases (From Topology)T: a/b domain in family 98 glycoside hydrolasesF: Glyco_hydro_98C_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
A3.30.2330.20 Alpha Beta 2-Layer Sandwich arginine biosynthesis bifunctional protein fold family 98 glycoside hydrolaseCATH (4.3.0)
A2.60.220.10 Mainly Beta Sandwich Chondroitinase Ac Chain A, domain 3CATH (4.3.0)
B3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
B3.30.2330.20 Alpha Beta 2-Layer Sandwich arginine biosynthesis bifunctional protein fold family 98 glycoside hydrolaseCATH (4.3.0)
B2.60.220.10 Mainly Beta Sandwich Chondroitinase Ac Chain A, domain 3CATH (4.3.0)