2XID
Pilus-presented adhesin, Spy0125 (Cpa), P212121 form (DLS)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TED_1st | e2xidA20 | A: beta barrels | X: OB-fold | H: Pilus-presented adhesin barrel insertion domain (From Topology) | T: Pilus-presented adhesin barrel insertion domain | F: TED_1st | ECOD (1.6) |
A | Cna_B_like | e2xidA17 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: Cna_B_like | ECOD (1.6) |
A | SdrD_B_1 | e2xidA18 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: SdrD_B_1 | ECOD (1.6) |
A | TED_2nd_1 | e2xidA19 | A: alpha arrays | X: Pilus-presented adhesin helical insertion domain (From Topology) | H: Pilus-presented adhesin helical insertion domain (From Topology) | T: Pilus-presented adhesin helical insertion domain | F: TED_2nd_1 | ECOD (1.6) |
B | TED_1st | e2xidB2 | A: beta barrels | X: OB-fold | H: Pilus-presented adhesin barrel insertion domain (From Topology) | T: Pilus-presented adhesin barrel insertion domain | F: TED_1st | ECOD (1.6) |
B | Cna_B_like | e2xidB4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: Cna_B_like | ECOD (1.6) |
B | SdrD_B_1 | e2xidB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: SdrD_B_1 | ECOD (1.6) |
B | TED_2nd_1 | e2xidB3 | A: alpha arrays | X: Pilus-presented adhesin helical insertion domain (From Topology) | H: Pilus-presented adhesin helical insertion domain (From Topology) | T: Pilus-presented adhesin helical insertion domain | F: TED_2nd_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.30.30.670 | Mainly Beta | Roll | SH3 type barrels. | Thioester domain | CATH (4.3.0) |
A | 1.10.150.480 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 2.60.40.1140 | Mainly Beta | Sandwich | Immunoglobulin-like | Collagen-binding surface protein Cna, B-type domain | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.30.30.670 | Mainly Beta | Roll | SH3 type barrels. | Thioester domain | CATH (4.3.0) |
B | 1.10.150.480 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
B | 2.60.40.1140 | Mainly Beta | Sandwich | Immunoglobulin-like | Collagen-binding surface protein Cna, B-type domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08341 | Thioester domain (TED) | Thioester domain | This domain is found near the N-terminus of a variety of bacterial surface proteins and pili. This domain contains an unusual covalent ester bond between a conserved cysteine and glutamine residue [1]. | Domain | |
PF17802 | Prealbumin-like fold domain (SpaA) | Prealbumin-like fold domain | This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae [1]. Some members of this family contain an isopeptide bond.ED A0 ... | Domain | |
PF19407 | Domain of unknown function (DUF5979) (DUF5979) | Domain of unknown function (DUF5979) | This domain is found as tandem repeats in bacterial cell surface proteins, associated with TED adhesive domains. This domain contains a conserved lysine, glutamic acid and asparagine diagnostic of an intradomain isopeptide bond. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
ANCILLARY PROTEIN 1 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR053671 | Pilus tip thioester-containing adhesin | Family | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR046022 | Domain of unknown function DUF5979 | Domain | |
IPR041033 | SpaA-like, prealbumin fold domain subgroup 1 | Domain | |
IPR023849 | TQXA domain | Domain | |
IPR013552 | Thioester domain | Domain |