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crystal structure of alpha-xylosidase (GH31) from Cellvibrio japonicus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyYicI C-terminal domain-like 8090415 3000267 SCOP2B (2022-06-29)
ASCOP2B Superfamily(Trans)glycosidases 8090419 3000313 SCOP2B (2022-06-29)
ASCOP2B Superfamilygalactose-binding domain-like 8090417 3000087 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGalactose mutarotase-like 8090414 3000035 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8090421 3001528 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGalactose mutarotase-like 8090414 3000035 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APA14e2xvgA1 A: alpha arraysX: Acyl-CoA binding protein-likeH: Acyl-CoA binding protein-likeT: Acyl-CoA binding protein-likeF: PA14ECOD (v295.2)
AI-sete2xvgA5 A: alpha arraysX: Acyl-CoA binding protein-likeH: Acyl-CoA binding protein-likeT: Acyl-CoA binding protein-likeF: I-setECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.1760 Mainly Beta Sandwich Immunoglobulin-like glycosyl hydrolase (family 31)CATH (4.3.0)
A2.60.120.380 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
A2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21365Glycosyl hydrolase family 31 C-terminal domain (Glyco_hydro_31_3rd)Glycosyl hydrolase family 31 C-terminal domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry represents the 3rd beta sandwich domain. Domain
PF13802Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain (Gal_mutarotas_2)Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domainThis entry represents the first of three common domains found in Glycosyl hydrolase 31 family proteins. It has a galactose mutarotase superfamily fold. Domain
PF17137Glycoside hydrolase family 31 C-terminal domain (GH31_C)Glycoside hydrolase family 31 C-terminal domainThis entry represents a C-terminal domain of approximately 70 residues found in glycoside hydrolase family 31 (GH31) enzymes. The domain is found in both bacteria and eukaryotes, including Bacteroidota, Bacillota, Pseudomonadota and fungi. It occurs ...This entry represents a C-terminal domain of approximately 70 residues found in glycoside hydrolase family 31 (GH31) enzymes. The domain is found in both bacteria and eukaryotes, including Bacteroidota, Bacillota, Pseudomonadota and fungi. It occurs downstream of the GH31 catalytic TIM barrel domain (Pfam:PF01055) and the proximal C-terminal domain (Pfam:PF21365). GH31 enzymes containing this domain include alpha-xylosidases involved in xyloglucan saccharification [1], alpha-glucosidases, and glucosidase II alpha subunits. In Saccharomyces cerevisiae, the glucosidase II alpha subunit ROT2 (Swiss:P38138) cleaves the two innermost alpha-1,3-linked glucose residues from the oligosaccharide precursor of immature glycoproteins in the endoplasmic reticulum (EC:3.2.1.207) [3]. Structural studies of the Chaetomium thermophilum glucosidase II alpha subunit show that the distal C-terminal domain stabilises the catalytic beta8-alpha8 barrel domain [2].
Domain
PF01055Glycosyl hydrolases family 31 TIM-barrel domain (Glyco_hydro_31_2nd)Glycosyl hydrolases family 31 TIM-barrel domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry corresponds to the second domain of family 31 enzymes and adopts a TIM-barrel fold. Domain