2YH9 | pdb_00002yh9

Crystal structure of the dimeric BamE from E. coli

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	BLIP repeat-like	8092082	3000321	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	BLIP repeat-like	8092082	3000321	SCOP2B (2022-06-29)
A	SCOP2 Family	BamE-like	8045788	4004687	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	BLIP repeat-like	8092082	3000321	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	GIY-YIG	e2yh9C1	A: a/b three-layered sandwiches	X: GIY-YIG endonuclease	H: GIY-YIG endonuclease	T: GIY-YIG endonuclease	F: GIY-YIG	ECOD (v294.1)
B	PsbH	e2yh9B1	A: a/b three-layered sandwiches	X: RuvA-C	H: Hypothetical protein MTH1615	T: Hypothetical protein MTH1615	F: PsbH	ECOD (v294.1)
A	GIY-YIG	e2yh9A1	A: a/b three-layered sandwiches	X: GIY-YIG endonuclease	H: GIY-YIG endonuclease	T: GIY-YIG endonuclease	F: GIY-YIG	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.1450.10	Alpha Beta	2-Layer Sandwich	Beta-lactamase Inhibitory Protein	Chain:B, domain 1	CATH (4.3.0)
B	3.30.1450.10	Alpha Beta	2-Layer Sandwich	Beta-lactamase Inhibitory Protein	Chain:B, domain 1	CATH (4.3.0)
A	3.30.1450.10	Alpha Beta	2-Layer Sandwich	Beta-lactamase Inhibitory Protein	Chain:B, domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	SMALL PROTEIN A	protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein binding binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane response to stimulus response to chemical response to antibiotic	cellular anatomical structure membrane protein-containing complex extracellular region periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex cell outer membrane external encapsulating structure cell envelope extracellular protein-containing complex outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR037873	BamE-like	Homologous Superfamily
A, B, C	IPR007450	Outer membrane protein assembly factor BamE domain	Domain
A, B, C	IPR026592	Outer membrane protein assembly factor BamE	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Omp85-TpsB Outer Membrane Transporter Superfamily	BamE component of the Bam β-barrel assembly machine

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.