2YMU | pdb_00002ymu

Structure of a highly repetitive propeller structure

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2ymub1	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	automated matches	automated matches	(Nostoc punctiforme ) [TaxId: 272131 ],	SCOPe (2.08)
B	d2ymub3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Nostoc punctiforme ) [TaxId: 272131 ],	SCOPe (2.08)
A	d2ymua1	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	automated matches	automated matches	(Nostoc punctiforme ) [TaxId: 272131 ],	SCOPe (2.08)
A	d2ymua3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Nostoc punctiforme ) [TaxId: 272131 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	WD40,ANAPC4_WD40	e2ymuB1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: WD40,ANAPC4_WD40	ECOD (develop294)
A	WD40,ANAPC4_WD40	e2ymuA1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: WD40,ANAPC4_WD40	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	WD-40 REPEAT PROTEIN	cation binding ion binding binding metal ion binding small molecule binding	protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A, B	IPR007926	Borrelia P83100	Family
A, B	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A, B	IPR001680	WD40 repeat	Repeat
A, B	IPR051983	WD repeat and SOCS box domain-containing protein	Family
A, B	IPR019775	WD40 repeat, conserved site	Conserved Site
A, B	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.