Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySybindin-like 8045357 4004434 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySNARE-like 8090320 3001113 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
ESCOP2 FamilyTRAPP components 8065541 4003802 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2 (2022-06-29)
JSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2022-06-29)
OSCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2022-06-29)
USCOP2 FamilySybindin-like 8045358 4004434 SCOP2 (2022-06-29)
USCOP2 SuperfamilySNARE-like 8090321 3001113 SCOP2 (2022-06-29)
FSCOP2B SuperfamilyRas-like P-loop GTPases 8057264 3002022 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRas-like P-loop GTPases 8057264 3002022 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyRas-like P-loop GTPases 8057264 3002022 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyRas-like P-loop GTPases 8057264 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASybindine3cueA1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
GSybindine3cueG1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
MSybindine3cueM1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
SSybindine3cueS1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
DTRAPPe3cueD1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
ETRAPPe3cueE1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
JTRAPPe3cueJ1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
PTRAPPe3cueP1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
VTRAPPe3cueV1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
KTRAPPe3cueK1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
QTRAPPe3cueQ1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
WTRAPPe3cueW1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
BTRAPPe3cueB1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
HTRAPPe3cueH1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
NTRAPPe3cueN1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
TTRAPPe3cueT1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
CSybindine3cueC1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
ISybindine3cueI1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
OSybindine3cueO1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
USybindine3cueU1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
FRase3cueF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
LRase3cueL1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
RRase3cueR1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
XRase3cueX1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.450.70 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (4.3.0)
G3.30.450.70 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (4.3.0)
M3.30.450.70 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (4.3.0)
S3.30.450.70 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (4.3.0)
D3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
E3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
J3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
P3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
V3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
K3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
Q3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
W3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
B3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
H3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
N3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
T3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase domain 2CATH (4.3.0)
C3.30.450.70 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (4.3.0)
I3.30.450.70 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (4.3.0)
O3.30.450.70 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (4.3.0)
U3.30.450.70 Alpha Beta 2-Layer Sandwich Beta-Lactamase CATH (4.3.0)
F3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
L3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
R3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
X3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, G, M, S
PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
D, E, J, K, P
PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
B, H, N, T
PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
C, I, O, U
PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
F, L, R, X
PF00071Ras family (Ras)Ras familyIncludes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ...Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, G, M, S
Transport protein particle 23 kDa subunit-
D, E, J, K, P
Transport protein particle 22 kDa subunit-
B, H, N, T
Transport protein particle 31 kDa subunit-
C, I, O, U
Transport protein particle 18 kDa subunit-
F, L, R, X
GTP-binding protein YPT1