3CUE
Crystal structure of a TRAPP subassembly activating the Rab Ypt1p
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Sybindin-like | 8045357 | 4004434 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SNARE-like | 8090320 | 3001113 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
E | SCOP2 Family | TRAPP components | 8065541 | 4003802 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2 (2022-06-29) |
J | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
V | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
W | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | SNARE-like | 8090321 | 3001113 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | SNARE-like | 8090321 | 3001113 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | SNARE-like | 8090321 | 3001113 | SCOP2B (2022-06-29) |
U | SCOP2 Family | Sybindin-like | 8045358 | 4004434 | SCOP2 (2022-06-29) |
U | SCOP2 Superfamily | SNARE-like | 8090321 | 3001113 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057264 | 3002022 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057264 | 3002022 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057264 | 3002022 | SCOP2B (2022-06-29) |
X | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057264 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sybindin | e3cueA1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sybindin | ECOD (1.6) |
G | Sybindin | e3cueG1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sybindin | ECOD (1.6) |
M | Sybindin | e3cueM1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sybindin | ECOD (1.6) |
S | Sybindin | e3cueS1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sybindin | ECOD (1.6) |
D | TRAPP | e3cueD1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
E | TRAPP | e3cueE1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
J | TRAPP | e3cueJ1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
P | TRAPP | e3cueP1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
V | TRAPP | e3cueV1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
K | TRAPP | e3cueK1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
Q | TRAPP | e3cueQ1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
W | TRAPP | e3cueW1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
B | TRAPP | e3cueB1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
H | TRAPP | e3cueH1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
N | TRAPP | e3cueN1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
T | TRAPP | e3cueT1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
C | Sybindin | e3cueC1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sybindin | ECOD (1.6) |
I | Sybindin | e3cueI1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sybindin | ECOD (1.6) |
O | Sybindin | e3cueO1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sybindin | ECOD (1.6) |
U | Sybindin | e3cueU1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sybindin | ECOD (1.6) |
F | Ras | e3cueF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
L | Ras | e3cueL1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
R | Ras | e3cueR1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
X | Ras | e3cueX1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04099 | Sybindin-like family (Sybindin) | Sybindin-like family | - | Family | |
PF04051 | Transport protein particle (TRAPP) component (TRAPP) | Transport protein particle (TRAPP) component | - | Family | |
PF04051 | Transport protein particle (TRAPP) component (TRAPP) | Transport protein particle (TRAPP) component | - | Family | |
PF04099 | Sybindin-like family (Sybindin) | Sybindin-like family | - | Family | |
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007233 | Trafficking protein particle complex subunit | Family | |
IPR011012 | Longin-like domain superfamily | Homologous Superfamily | |
IPR024096 | NO signalling/Golgi transport ligand-binding domain superfamily | Homologous Superfamily | |
IPR007194 | Transport protein particle (TRAPP) component | Family | |
IPR016721 | Bet3 family | Family | |
IPR024096 | NO signalling/Golgi transport ligand-binding domain superfamily | Homologous Superfamily | |
IPR016696 | TRAPP I complex, subunit 5 | Family | |
IPR007194 | Transport protein particle (TRAPP) component | Family | |
IPR007233 | Trafficking protein particle complex subunit | Family | |
IPR011012 | Longin-like domain superfamily | Homologous Superfamily | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR050227 | Ras-related protein Rab | Family |