3DBJ | pdb_00003dbj

Allophycocyanin from Thermosynechococcus vulcanus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3dbja_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Thermostichus vulcanus ) [TaxId: 32053 ],	SCOPe (2.08)
C	d3dbjc_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Thermostichus vulcanus ) [TaxId: 32053 ],	SCOPe (2.08)
E	d3dbje_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Thermostichus vulcanus ) [TaxId: 32053 ],	SCOPe (2.08)
G	d3dbjg_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Thermostichus vulcanus ) [TaxId: 32053 ],	SCOPe (2.08)
B	d3dbjb_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Thermostichus vulcanus ) [TaxId: 32053 ],	SCOPe (2.08)
D	d3dbjd_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Thermostichus vulcanus ) [TaxId: 32053 ],	SCOPe (2.08)
F	d3dbjf_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Thermostichus vulcanus ) [TaxId: 32053 ],	SCOPe (2.08)
H	d3dbjh_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Thermostichus vulcanus ) [TaxId: 32053 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8064859	4000579	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Globin-like	8064860	3000554	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Globin-like	8098716	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8098716	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8098716	3000554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Globin-like	8098716	3000554	SCOP2B (2022-06-29)
B	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8064851	4000579	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Globin-like	8064852	3000554	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Globin-like	8098718	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8098718	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8098718	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8098718	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e3dbjA1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: zf-CCCH_4	F:	ECOD (20:10:01)
C		e3dbjC1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: zf-CCCH_4	F:	ECOD (20:10:01)
E		e3dbjE1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: zf-CCCH_4	F:	ECOD (20:10:01)
G		e3dbjG1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: zf-CCCH_4	F:	ECOD (20:10:01)
B		e3dbjB1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: zf-CCCH_4	F:	ECOD (20:10:01)
D		e3dbjD1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: zf-CCCH_4	F:	ECOD (20:10:01)
F		e3dbjF1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: zf-CCCH_4	F:	ECOD (20:10:01)
H		e3dbjH1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: zf-CCCH_4	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
C	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
E	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
G	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
B	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
D	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
F	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
H	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
B, D, F, H	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G	Allophycocyanin	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, D, F, H	Allophycocyanin	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C, E, G	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E, G	IPR012128	Phycobilisome, alpha/beta subunit	Family
B, D, F, H	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D, F, H	IPR006245	Allophycocyanin, beta subunit	Family
B, D, F, H	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F, H	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F, H	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.