3GF5 | pdb_00003gf5

Crystal structure of the P21 R1-R7 N-terminal domain of murine MVP

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	MIF	e3gf5B1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (develop294)
A	Vault_2	e3gf5A2	A: alpha bundles	X: Major vault protein (MVP) structural repeat domain	H: Major vault protein (MVP) structural repeat domain	T: Major vault protein (MVP) structural repeat domain	F: Vault_2	ECOD (develop294)
A	Vault	e3gf5A3	A: alpha bundles	X: Major vault protein (MVP) structural repeat domain	H: Major vault protein (MVP) structural repeat domain	T: Major vault protein (MVP) structural repeat domain	F: Vault	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.30.570	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
B	2.30.30.560	Mainly Beta	Roll	SH3 type barrels.	Major vault protein, N-terminal structural repeat domain	CATH (4.3.0)
B	2.30.30.550	Mainly Beta	Roll	SH3 type barrels.	Major Vault Protein repeat	CATH (4.3.0)
A	2.30.30.570	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
A	2.30.30.560	Mainly Beta	Roll	SH3 type barrels.	Major vault protein, N-terminal structural repeat domain	CATH (4.3.0)
A	2.30.30.550	Mainly Beta	Roll	SH3 type barrels.	Major Vault Protein repeat	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01505	Major Vault Protein repeat domain (Vault)	Major Vault Protein repeat domain	The vault is a ubiquitous and highly conserved ribonucleoprotein particle of approximately 13 mDa of unknown function [1]. This family corresponds to a repeated domain found in the amino terminal half of the major vault protein.	Domain
A, B	PF17794	Major Vault Protein repeat domain (Vault_2)	Major Vault Protein repeat domain	This short domain is found repeated numerous times in the Major Vault Protein. This entry is related to Pfam:PF01505.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Major vault protein	protein binding binding kinase binding enzyme binding protein kinase binding identical protein binding protein phosphatase binding phosphatase binding	cell population proliferation cellular process cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cell communication regulation of epidermal growth factor receptor signaling pathway cell population proliferation cellular process cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cell communication regulation of epidermal growth factor receptor signaling pathway negative regulation of cellular process epidermal growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of biological process regulation of signaling regulation of ERBB signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus biological regulation negative regulation of signal transduction regulation of response to stimulus negative regulation of epidermal growth factor receptor signaling pathway ERBB signaling pathway regulation of cell communication protein activation cascade biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasm cytosol perinuclear region of cytoplasm protein-containing complex ribonucleoprotein complex membrane-bounded organelle nucleus intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasm cytosol perinuclear region of cytoplasm protein-containing complex ribonucleoprotein complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR040989	Major vault protein repeat domain 3	Domain
A, B	IPR039059	Major vault protein	Family
A, B	IPR041136	Major vault protein repeat domain 4	Domain
A, B	IPR036013	Band 7/SPFH domain superfamily	Homologous Superfamily
A, B	IPR002499	Major vault protein, N-terminal	Repeat
A, B	IPR041139	Major vault protein repeat domain	Domain
A, B	IPR043023	Major vault protein repeat domain superfamily	Homologous Superfamily
A, B	IPR043179	Major vault protein repeat domain 2 superfamily	Homologous Superfamily
A, B	IPR021870	Major vault protein, shoulder domain	Domain
A, B	IPR041134	Major vault protein repeat domain 2	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.