3GVD | pdb_00003gvd

Crystal Structure of Serine Acetyltransferase CysE from Yersinia pestis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d3gvdl_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
K	d3gvdk_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
J	d3gvdj_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
I	d3gvdi1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
I	d3gvdi2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
H	d3gvdh1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
H	d3gvdh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
G	d3gvdg_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
F	d3gvdf_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
E	d3gvde_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
D	d3gvdd_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
C	d3gvdc1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
C	d3gvdc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
B	d3gvdb1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
B	d3gvdb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
A	d3gvda_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Serine acetyltransferase	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2B (2022-06-29)
A	SCOP2 Family	Serine acetyltransferase	8101252	4001889	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Trimeric LpxA-like enzymes	8101253	3001804	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Thymidylat_synt	e3gvdL1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
K	Thymidylat_synt	e3gvdK1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
J	Thymidylat_synt	e3gvdJ1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
I	Thymidylat_synt	e3gvdI1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
H	Thymidylat_synt	e3gvdH1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
G	Thymidylat_synt	e3gvdG1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
F	Thymidylat_synt	e3gvdF1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
E	Thymidylat_synt	e3gvdE1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
D	Thymidylat_synt	e3gvdD1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
C	Thymidylat_synt	e3gvdC1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
B	Thymidylat_synt	e3gvdB1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)
A	Thymidylat_synt	e3gvdA1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Thymidylat_synt	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
L	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
K	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
K	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
J	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
J	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
I	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
I	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
H	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
H	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
G	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
G	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
F	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
F	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
E	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
E	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
D	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
D	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
C	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
C	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
B	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
B	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
A	1.10.3130.10	Mainly Alpha	Orthogonal Bundle	serine acetyltransferase, domain 1	serine acetyltransferase, domain 1	CATH (4.3.0)
A	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00132	Bacterial transferase hexapeptide (six repeats) (Hexapep)	Bacterial transferase hexapeptide (six repeats)	-	Repeat
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF06426	Serine acetyltransferase, N-terminal (SATase_N)	Serine acetyltransferase, N-terminal	The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants [2] and bacteria [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Serine acetyltransferase	acetyltransferase activity serine O-acyltransferase activity O-acyltransferase activity serine O-acetyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity O-acetyltransferase activity catalytic activity	oxoacid metabolic process sulfur amino acid metabolic process L-cysteine metabolic process L-cysteine biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process small molecule metabolic process sulfur compound metabolic process small molecule biosynthetic process carboxylic acid metabolic process primary metabolic process oxoacid metabolic process sulfur amino acid metabolic process L-cysteine metabolic process L-cysteine biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process small molecule metabolic process sulfur compound metabolic process small molecule biosynthetic process carboxylic acid metabolic process primary metabolic process L-amino acid biosynthetic process L-serine metabolic process L-amino acid metabolic process cysteine metabolic process proteinogenic amino acid metabolic process amino acid biosynthetic process sulfur compound biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process cellular process serine family amino acid biosynthetic process sulfur amino acid biosynthetic process L-cysteine biosynthetic process from L-serine alpha-amino acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR045304	Serine acetyltransferase, LbH domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR042122	Serine acetyltransferase, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR010493	Serine acetyltransferase, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR005881	Serine O-acetyltransferase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR053376	Serine acetyltransferase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR018357	Hexapeptide transferase, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001451	Hexapeptide repeat	Repeat