3GYS | pdb_00003gys

Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.9 angstrom resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3gysh_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	(Felis catus ) [TaxId: 9685 ],	SCOPe (2.08)
F	d3gysf_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	(Felis catus ) [TaxId: 9685 ],	SCOPe (2.08)
D	d3gysd_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	(Felis catus ) [TaxId: 9685 ],	SCOPe (2.08)
B	d3gysb_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	(Felis catus ) [TaxId: 9685 ],	SCOPe (2.08)
G	d3gysg_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	(Felis catus ) [TaxId: 9685 ],	SCOPe (2.08)
E	d3gyse_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	(Felis catus ) [TaxId: 9685 ],	SCOPe (2.08)
C	d3gysc_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	(Felis catus ) [TaxId: 9685 ],	SCOPe (2.08)
A	d3gysa_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	(Felis catus ) [TaxId: 9685 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Globin-like	8061006	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8061006	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8061006	3000554	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Globin-like	8061006	3000554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Globin-like	8060942	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8060942	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8060942	3000554	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Globin-like	8060942	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	RVP	e3gysH1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
F	RVP	e3gysF1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
D	RVP	e3gysD1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
B	RVP	e3gysB1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
G	RVP	e3gysG1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
E	RVP	e3gysE1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
C	RVP	e3gysC1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)
A	RVP	e3gysA1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
F	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
D	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
B	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
G	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
E	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
C	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
A	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H	PF00042	Globin (Globin)	Globin		Domain
A, C, E, G	PF00042	Globin (Globin)	Globin		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	Hemoglobin subunit beta-A/B	oxygen binding binding small molecule binding hemoglobin binding protein binding hemoglobin alpha binding oxygen carrier activity molecular carrier activity tetrapyrrole binding heme binding cation binding ion binding metal ion binding	oxygen transport localization transport gas transport establishment of localization developmental process multicellular organismal process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis oxygen transport localization transport gas transport establishment of localization developmental process multicellular organismal process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development myeloid cell development homeostasis of number of cells cellular process myeloid cell homeostasis erythrocyte homeostasis	protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex
A, C, E, G	Hemoglobin subunit alpha	oxygen binding binding small molecule binding oxygen carrier activity molecular carrier activity tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding	oxygen transport localization transport gas transport establishment of localization developmental process multicellular organismal process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis oxygen transport localization transport gas transport establishment of localization developmental process multicellular organismal process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development myeloid cell development homeostasis of number of cells cellular process myeloid cell homeostasis erythrocyte homeostasis	protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR050056	Hemoglobin and related oxygen transporters	Family
B, D, F, H	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F, H	IPR012292	Globin/Protoglobin	Homologous Superfamily
B, D, F, H	IPR002337	Hemoglobin, beta-type	Family
B, D, F, H	IPR000971	Globin	Domain
A, C, E, G	IPR050056	Hemoglobin and related oxygen transporters	Family
A, C, E, G	IPR002338	Hemoglobin, alpha-type	Family
A, C, E, G	IPR002339	Hemoglobin, pi	Family
A, C, E, G	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E, G	IPR012292	Globin/Protoglobin	Homologous Superfamily
A, C, E, G	IPR000971	Globin	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.