3GZJ | pdb_00003gzj

Crystal Structure of Polyneuridine Aldehyde Esterase Complexed with 16-epi-Vellosimine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d3gzje_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Hydroxynitrile lyase-like	automated matches	devilpepper (Rauvolfia serpentina ) [TaxId: 4060 ],	SCOPe (2.08)
D	d3gzjd_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Hydroxynitrile lyase-like	automated matches	devilpepper (Rauvolfia serpentina ) [TaxId: 4060 ],	SCOPe (2.08)
C	d3gzjc_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Hydroxynitrile lyase-like	automated matches	devilpepper (Rauvolfia serpentina ) [TaxId: 4060 ],	SCOPe (2.08)
B	d3gzjb_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Hydroxynitrile lyase-like	automated matches	devilpepper (Rauvolfia serpentina ) [TaxId: 4060 ],	SCOPe (2.08)
A	d3gzja_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Hydroxynitrile lyase-like	automated matches	devilpepper (Rauvolfia serpentina ) [TaxId: 4060 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	alpha/beta-Hydrolases	8081932	3000102	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha/beta-Hydrolases	8081932	3000102	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha/beta-Hydrolases	8081932	3000102	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha/beta-Hydrolases	8081932	3000102	SCOP2B (2022-06-29)
A	SCOP2 Family	Hydroxynitrile lyase-like	8081931	4000748	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha/beta-Hydrolases	8081932	3000102	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	YgbB	e3gzjE1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (develop294)
D	YgbB	e3gzjD1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (develop294)
C	YgbB	e3gzjC1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (develop294)
B	YgbB	e3gzjB1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (develop294)
A	YgbB	e3gzjA1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
D	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
C	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
B	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
A	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Polyneuridine-aldehyde esterase	hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity methyl jasmonate esterase activity catalytic activity methyl salicylate esterase activity polyneuridine-aldehyde esterase activity methyl indole-3-acetate esterase activity	indole alkaloid metabolic process alkaloid metabolic process metabolic process cellular process benzene-containing compound metabolic process oxoacid metabolic process phenol-containing compound metabolic process carboxylic acid metabolic process small molecule metabolic process salicylic acid metabolic process monocarboxylic acid metabolic process organic acid metabolic process fatty acid metabolic process long-chain fatty acid metabolic process indole alkaloid metabolic process alkaloid metabolic process metabolic process cellular process benzene-containing compound metabolic process oxoacid metabolic process phenol-containing compound metabolic process carboxylic acid metabolic process small molecule metabolic process salicylic acid metabolic process monocarboxylic acid metabolic process organic acid metabolic process fatty acid metabolic process long-chain fatty acid metabolic process jasmonic acid metabolic process primary metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR000073	Alpha/beta hydrolase fold-1	Domain
A, B, C, D, E	IPR045889	Methylesterase/Alpha-hydroxynitrile lyase	Family
A, B, C, D, E	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.