3H3Y | pdb_00003h3y

Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 star-shaped baseplate

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Metallophos	e3h3yL1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
K	Metallophos	e3h3yK1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
J	Metallophos	e3h3yJ1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
I	Metallophos	e3h3yI1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
H	Metallophos	e3h3yH1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
G	Metallophos	e3h3yG1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
F	Metallophos	e3h3yF1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
E	Metallophos	e3h3yE1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
D	Metallophos	e3h3yD1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
C	Metallophos	e3h3yC1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
B	Metallophos	e3h3yB1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
A	Metallophos	e3h3yA1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF21871	Baseplate structural protein gp6, C-terminal domain III (Gp6_C-III)	Baseplate structural protein gp6, C-terminal domain III	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain III.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF21387	Baseplate structural protein gp6, C-terminal domain I (Gp6_C-I)	Baseplate structural protein gp6, C-terminal domain I	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain I, and adopts a 2-layer beta-sandwich fold.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF21472	Baseplate structural protein gp6, C-terminal domain II (gp6_C-domII)	Baseplate structural protein gp6, C-terminal domain II	This entry represents domain II found in the C-terminal of gp6 from bacteriophage T4, which adopts a beta-barrel fold. This protein is involved in tail assembly. It forms the gp25-(gp6)2-gp7 module, involved in sheath contraction [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Baseplate structural protein Gp6	identical protein binding protein binding binding	virion assembly viral tail assembly viral process viral life cycle	virus tail virion component virus tail, baseplate

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR054065	Baseplate wedge protein gp6, C-terminal domain III	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR034698	Baseplate wedge protein gp6	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049027	Baseplate structural protein gp6, C-terminal domain I	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049026	Baseplate wedge protein gp6-like, N-terminal helical domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049028	Baseplate structural protein gp6, C-terminal domain II	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049029	Baseplate wedge protein gp6, domain II, first	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.