3HK9 | pdb_00003hk9

Crystal structure of uronate isomerase from Bacillus halodurans complexed with zinc and D-Glucuronate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d3hk9l_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
K	d3hk9k_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
J	d3hk9j_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
I	d3hk9i_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
H	d3hk9h_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
G	d3hk9g_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
F	d3hk9f_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
E	d3hk9e_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
D	d3hk9d_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
C	d3hk9c_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
B	d3hk9b_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)
A	d3hk9a_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	Uronate isomerase-like	Uncharacterized protein BH0493	(Halalkalibacterium halodurans C-125 ) [TaxId: 272558 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Metallo-dependent hydrolases	8035862	3000428	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	HTH_3	e3hk9L1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
K	HTH_3	e3hk9K1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
J	HTH_3	e3hk9J1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
I	HTH_3	e3hk9I1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
H	HTH_3	e3hk9H1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
G	HTH_3	e3hk9G1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
F	HTH_3	e3hk9F1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
E	HTH_3	e3hk9E1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
D	HTH_3	e3hk9D1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
C	HTH_3	e3hk9C1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
B	HTH_3	e3hk9B1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)
A	HTH_3	e3hk9A1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
K	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
J	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
I	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
H	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
G	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
F	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
E	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
D	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
C	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
B	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)
A	1.10.2020.10	Mainly Alpha	Orthogonal Bundle	uronate isomerase, domain 2, chain A	uronate isomerase, domain 2, chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Uronate isomerase	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR032466	Metal-dependent hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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