3HU5 | pdb_00003hu5

CRYSTAL STRUCTURE OF isochorismatase family protein from Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyIsochorismatase-like hydrolases 8065867 4000591 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyIsochorismatase-like hydrolases 8065868 3001778 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyIsochorismatase-like hydrolases 8065868 3001778 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APep_deformylasee3hu5A1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: FAD-dependent thiol oxidaseT: FAD-dependent thiol oxidaseF: Pep_deformylaseECOD (v294.1)
BRibosomal_L36e3hu5B1 A: a/b three-layered sandwichesX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: Ribosomal_L36ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.850 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Isochorismatase-likeCATH (4.3.0)
B3.40.50.850 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Isochorismatase-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00857Isochorismatase domain (Isochorismatase)Isochorismatase domainThis is a domain found in hydrolase enzymes. This domain is responsible for the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate. It shows a typical helix-sheet-helix sandwich structural architecture, with ...This is a domain found in hydrolase enzymes. This domain is responsible for the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate. It shows a typical helix-sheet-helix sandwich structural architecture, with a central beta--sheet made of six parallel strands, three alpha -helices on one side and two on the other [3,4].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR000868Isochorismatase-like domainDomain
A, B
IPR036380Isochorismatase-like superfamilyHomologous Superfamily