3IK4 | pdb_00003ik4

CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Herpetosiphon aurantiacus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3ik4a2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
A	d3ik4a1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
A	d3ik4a4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
A	d3ik4a3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
B	d3ik4b2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
B	d3ik4b1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
B	d3ik4b4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
B	d3ik4b3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
C	d3ik4c2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
C	d3ik4c1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
C	d3ik4c4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
C	d3ik4c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
D	d3ik4d2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
D	d3ik4d1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
D	d3ik4d4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)
D	d3ik4d3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Herpetosiphon aurantiacus DSM 785 ) [TaxId: 316274 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MR_MLE_N	e3ik4A1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Enolase N-terminal domain-like (From Topology)	T: Enolase N-terminal domain-like	F: MR_MLE_N	ECOD (1.6)
A	MR_MLE_C_1	e3ik4A2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: MR_MLE_C_1	ECOD (1.6)
B	MR_MLE_N	e3ik4B1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Enolase N-terminal domain-like (From Topology)	T: Enolase N-terminal domain-like	F: MR_MLE_N	ECOD (1.6)
B	MR_MLE_C_1	e3ik4B2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: MR_MLE_C_1	ECOD (1.6)
C	MR_MLE_N	e3ik4C1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Enolase N-terminal domain-like (From Topology)	T: Enolase N-terminal domain-like	F: MR_MLE_N	ECOD (1.6)
C	MR_MLE_C_1	e3ik4C2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: MR_MLE_C_1	ECOD (1.6)
D	MR_MLE_N	e3ik4D2	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Enolase N-terminal domain-like (From Topology)	T: Enolase N-terminal domain-like	F: MR_MLE_N	ECOD (1.6)
D	MR_MLE_C_1	e3ik4D1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: MR_MLE_C_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.2.0)
A	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.2.0)
B	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.2.0)
B	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.2.0)
C	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.2.0)
C	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.2.0)
D	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.2.0)
D	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Mandelate racemase/muconate lactonizing protein	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding isomerase activity racemase and epimerase activity catalytic activity racemase and epimerase activity, acting on amino acids and derivatives	metabolic process cellular process peptide metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029065	Enolase C-terminal domain-like	Domain
A, B, C, D	IPR013341	Mandelate racemase/muconate lactonizing enzyme, N-terminal domain	Domain
A, B, C, D	IPR034603	Dipeptide epimerase	Family
A, B, C, D	IPR013342	Mandelate racemase/muconate lactonizing enzyme, C-terminal	Domain
A, B, C, D	IPR029017	Enolase-like, N-terminal	Homologous Superfamily
A, B, C, D	IPR036849	Enolase-like, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.