3IMA

Complex structure of tarocystatin and papain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3imaa_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Papain-like	Papain	(Carica papaya ) [TaxId: 3649 ],	SCOPe (2.08)
C	d3imac_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Papain-like	Papain	(Carica papaya ) [TaxId: 3649 ],	SCOPe (2.08)
B	d3imab_	Alpha and beta proteins (a+b)	Cystatin-like	Cystatin/monellin	automated matches	automated matches	cocoyam,dasheen,eddo,elephant's ear,kalo,malanga (Colocasia esculenta ) [TaxId: 4460 ],	SCOPe (2.08)
D	d3imad_	Alpha and beta proteins (a+b)	Cystatin-like	Cystatin/monellin	automated matches	automated matches	cocoyam,dasheen,eddo,elephant's ear,kalo,malanga (Colocasia esculenta ) [TaxId: 4460 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cysteine proteinases	8036216	3001808	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cysteine proteinases	8036216	3001808	SCOP2B (2022-06-29)
B	SCOP2 Family	Cystatins	8073971	4001013	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Cystatin/monellin	8073972	3000441	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Cystatin/monellin	8073972	3000441	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_C1	e3imaA1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: Peptidase_C1	ECOD (1.6)
C	Peptidase_C1	e3imaC1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: Peptidase_C1	ECOD (1.6)
B	Cystatin	e3imaB1	A: a+b two layers	X: Cystatin-like	H: Cystatin/monellin (From Topology)	T: Cystatin/monellin	F: Cystatin	ECOD (1.6)
D	Cystatin	e3imaD1	A: a+b two layers	X: Cystatin-like	H: Cystatin/monellin (From Topology)	T: Cystatin/monellin	F: Cystatin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)
C	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)
B	3.10.450.10	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D	3.10.450.10	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF00112	Papain family cysteine protease (Peptidase_C1)	Papain family cysteine protease		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Papain	protein binding binding serpin family protein binding cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-
B, D	Cysteine proteinase inhibitor	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity cysteine-type endopeptidase inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, C	IPR025661	Cysteine peptidase, asparagine active site	Active Site
A, C	IPR000169	Cysteine peptidase, cysteine active site	Active Site
A, C	IPR025660	Cysteine peptidase, histidine active site	Active Site
A, C	IPR013128	Peptidase C1A	Family
A, C	IPR000668	Peptidase C1A, papain C-terminal	Domain
A, C	IPR013201	Cathepsin propeptide inhibitor domain (I29)	Domain
A, C	IPR039417	Papain-like cysteine endopeptidase	Domain
B, D	IPR027214	Cystatin	Family
B, D	IPR000010	Cystatin domain	Domain
B, D	IPR046350	Cystatin superfamily	Homologous Superfamily
B, D	IPR018073	Proteinase inhibitor I25, cystatin, conserved site	Conserved Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, C	OCS	Parent Component: CYS RESID: AA0556 PSI-MOD : L-cysteic acid (L-cysteine sulfonic acid) MOD:00460

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.