3LIB | pdb_00003lib

Crystal Structure of the extracellular domain of the putative histidine kinase mmHK1S-Z3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d3libj_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
I	d3libi_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
H	d3libh_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
G	d3libg_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
F	d3libf_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
E	d3libe_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
D	d3libd_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
C	d3libc_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
B	d3libb_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)
A	d3liba_	Alpha and beta proteins (a+b)	Profilin-like	Sensory domain-like	Histidine kinase family 1 (HK1) sensor domains	MM_2965	Methanosarcina frisia (Methanosarcina mazei ) [TaxId: 2209 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J		e3libJ1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
I		e3libI1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
H		e3libH1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
G		e3libG1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
F		e3libF1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
E		e3libE1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
D		e3libD1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
C		e3libC1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
B		e3libB1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)
A		e3libA1	A: amino-terminal domain of OmpATb	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: BON	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
I	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
H	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
G	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
F	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
E	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
D	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
C	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
B	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)
A	3.30.450.20	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	PAS domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Hypothetical sensory transduction histidine kinase	catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, nitrogenous group as acceptor phosphotransferase activity, alcohol group as acceptor protein histidine kinase activity transferase activity, transferring phosphorus-containing groups	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR000014	PAS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR033479	Double Cache domain 1	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR003660	HAMP domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR011495	Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR035965	PAS domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR001610	PAC motif	Repeat
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR003594	Histidine kinase/HSP90-like ATPase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR000700	PAS-associated, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR005467	Histidine kinase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR013655	PAS fold 3	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.