3OGL

Structure of COI1-ASK1 in complex with JA-isoleucine and the JAZ1 degron

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth S]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
C [auth Q]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
F [auth R]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
N [auth U]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
Q [auth V]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
T [auth W]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)
W [auth X]	SCOP2B Superfamily	CCT motif-like	8053392	3002182	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth E]	Skp1_POZ	e3oglE1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: Skp1_POZ	ECOD (1.6)
J [auth G]	Skp1_POZ	e3oglG1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: Skp1_POZ	ECOD (1.6)
A	Skp1_POZ	e3oglA1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: Skp1_POZ	ECOD (1.6)
D [auth C]	Skp1_POZ	e3oglC1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: Skp1_POZ	ECOD (1.6)
L [auth I]	Skp1_POZ	e3oglI1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: Skp1_POZ	ECOD (1.6)
O [auth K]	Skp1_POZ	e3oglK1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: Skp1_POZ	ECOD (1.6)
R [auth M]	Skp1_POZ	e3oglM1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: Skp1_POZ	ECOD (1.6)
U [auth O]	Skp1_POZ	e3oglO1	A: a+b two layers	X: POZ domain (From Topology)	H: POZ domain (From Topology)	T: POZ domain	F: Skp1_POZ	ECOD (1.6)
B	LRR_8_4	e3oglB3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4	ECOD (1.6)
B	F-box-like_4	e3oglB2	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: F-box-like_4	ECOD (1.6)
E [auth D]	LRR_8_4	e3oglD3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4	ECOD (1.6)
E [auth D]	F-box-like_4	e3oglD2	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: F-box-like_4	ECOD (1.6)
H [auth F]	LRR_8_4	e3oglF3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4	ECOD (1.6)
H [auth F]	F-box-like_4	e3oglF2	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: F-box-like_4	ECOD (1.6)
K [auth H]	LRR_8_4,F-box-like_4	e3oglH2	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4,F-box-like_4	ECOD (1.6)
M [auth J]	LRR_8_4	e3oglJ3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4	ECOD (1.6)
M [auth J]	F-box-like_4	e3oglJ2	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: F-box-like_4	ECOD (1.6)
P [auth L]	LRR_8_4	e3oglL3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4	ECOD (1.6)
P [auth L]	F-box-like_4	e3oglL2	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: F-box-like_4	ECOD (1.6)
S [auth N]	LRR_8_4	e3oglN3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4	ECOD (1.6)
S [auth N]	F-box-like_4	e3oglN2	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: F-box-like_4	ECOD (1.6)
V [auth P]	LRR_8_4	e3oglP3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4	ECOD (1.6)
V [auth P]	F-box-like_4	e3oglP2	A: alpha arrays	X: F-box domain (From Topology)	H: F-box domain (From Topology)	T: F-box domain	F: F-box-like_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth E]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
J [auth G]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
A	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
D [auth C]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
L [auth I]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
O [auth K]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
R [auth M]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
U [auth O]	3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1	Chain A	CATH (4.3.0)
B	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
B	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
E [auth D]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
E [auth D]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
H [auth F]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
H [auth F]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
K [auth H]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
K [auth H]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
M [auth J]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
M [auth J]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
P [auth L]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
P [auth L]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
S [auth N]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
S [auth N]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
V [auth P]	1.20.1280.50	Mainly Alpha	Up-down Bundle	Monooxygenase		CATH (4.3.0)
V [auth P]	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain		Domain
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	PF18791	Transport inhibitor response 1 protein domain (Transp_inhibit)	Transport inhibitor response 1 protein domain	-	Repeat
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	PF18511	F-box (F-box_5)	F-box	Jasmonates are a family of plant hormones that regulate plant growth, development and responses to stress. COI1 is an F-box protein that functions as the substrate-recruiting module of the Skp1-Cul1-F-box protein (SCF) ubiquitin E3 ligase complex. Th ...	Jasmonates are a family of plant hormones that regulate plant growth, development and responses to stress. COI1 is an F-box protein that functions as the substrate-recruiting module of the Skp1-Cul1-F-box protein (SCF) ubiquitin E3 ligase complex. The role of COI1-mediated JAZ degradation in jasmonate (JA) signaling is analogous to auxin signaling through the receptor F-box protein transport inhibitor response 1 (TIR1) , which promotes hormone-dependent turnover of the AUX/IAA transcriptional repressors. The crystal structure of COI1 reveals a TIR1-like overall architecture, with an N-terminal tri-helical F-box motif bound to ASK1 and a C-terminal horseshoe-shaped solenoid domain formed by 18 tandem leucine-rich repeats. This entry represents the N-terminal F-box domain which is also found in other auxin signaling f-box proteins such as AFB1, AFB2 and AFB3 [1].	Domain
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	PF09425	Jas motif (Jas_motif)	Jas motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	SKP1-like protein 1A	-	catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process cellular process macromolecule metabolic process protein metabolic process cellular response to stimulus catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process cellular process macromolecule metabolic process protein metabolic process cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling cellular response to ethylene stimulus response to endogenous stimulus biological regulation hormone-mediated signaling pathway intracellular signal transduction cell communication cellular response to endogenous stimulus cellular response to chemical stimulus ethylene-activated signaling pathway response to hormone response to chemical response to ethylene signal transduction cellular response to hormone stimulus response to auxin cell cycle chromosome segregation cell cycle process cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization response to lipid response to jasmonic acid response to fatty acid response to oxygen-containing compound cellular response to jasmonic acid stimulus jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to lipid regulation of DNA recombination negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process DNA recombination regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process negative regulation of DNA recombination negative regulation of DNA metabolic process regulation of metabolic process regulation of DNA metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal auxin-activated signaling pathway cellular response to auxin stimulus	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle phragmoplast cytosol cytoskeleton spindle membraneless organelle intracellular membraneless organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle phragmoplast cytosol cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex nucleus
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	Coronatine-insensitive protein 1	-	biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to insect response to external stimulus response to external biotic stimulus response to biotic stimulus response to light stimulus shade avoidance response to radiation response to abiotic stimulus response to red or far red light jasmonic acid and ethylene-dependent systemic resistance defense response biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to insect response to external stimulus response to external biotic stimulus response to biotic stimulus response to light stimulus shade avoidance response to radiation response to abiotic stimulus response to red or far red light jasmonic acid and ethylene-dependent systemic resistance defense response defense response to symbiont defense response to other organism response to stress response to wounding developmental process multicellular organismal process plant organ development floral whorl development reproductive system development reproductive process stamen development flower development developmental process involved in reproduction reproductive shoot system development multicellular organism development anatomical structure development reproductive structure development shoot system development post-embryonic development phyllome development androecium development system development floral organ development defense response to fungus response to fungus response to lipid response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound cellular response to stimulus regulation of cellular process signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus signal transduction cellular response to hormone stimulus regulation of biological process biological regulation jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus cellular response to lipid cellular process response to far red light anther development dehiscence multicellular organismal reproductive process anther dehiscence primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to nitrogen compound cellular response to ATP response to organophosphorus response to nitrogen compound response to ATP response to purine-containing compound extracellular ATP signaling regulation of defense response negative regulation of response to stimulus negative regulation of biological process regulation of response to stimulus regulation of response to stress negative regulation of defense response catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process defense response to bacterium response to bacterium regulation of multicellular organismal development regulation of developmental process regulation of reproductive process regulation of shoot system development regulation of post-embryonic development regulation of multicellular organismal process regulation of flower development stomatal movement root development root system development	cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	JAZ1 incomplete degron peptide	identical protein binding protein binding binding	cellular response to stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to jasmonic acid cellular response to stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to jasmonic acid response to fatty acid response to endogenous stimulus biological regulation response to oxygen-containing compound jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid cellular process developmental process multicellular organism development multicellular organismal process gametophyte development anatomical structure development pollen development biological process involved in interspecies interaction between organisms response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus reproductive system development reproductive process flower development developmental process involved in reproduction reproductive shoot system development reproductive structure development shoot system development post-embryonic development system development response to alkaline pH cellular response to environmental stimulus regulation of response to stimulus response to pH cellular response to pH response to abiotic stimulus cellular response to alkaline pH cellular response to abiotic stimulus regulation of cellular response to alkaline pH	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR016073	SKP1 component, POZ domain	Domain
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR001232	S-phase kinase-associated protein 1-like	Family
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR016072	SKP1 component, dimerisation	Domain
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G], L [auth I], A, D [auth C], G [auth E], J [auth G], L [auth I], O [auth K], R [auth M], U [auth O]	IPR016897	S-phase kinase-associated protein 1	Family
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	IPR041567	COI1, F-box	Domain
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B, E [auth D], H [auth F], K [auth H], M [auth J], B, E [auth D], H [auth F], K [auth H], M [auth J], P [auth L], S [auth N], V [auth P]	IPR041101	Transport inhibitor response 1 domain	Domain
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	IPR040390	TIFY/JAZ family	Family
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	IPR018467	CO/COL/TOC1, conserved site	Conserved Site
C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], C [auth Q], F [auth R], I [auth S], N [auth U], Q [auth V], T [auth W], W [auth X]	IPR010399	Tify domain	Domain