3P93 | pdb_00003p93

Crystal structure of D-mannonate dehydratase from Chromohalobacter Salexigens complexed with MG,D-Mannonate and 2-keto-3-deoxy-D-Gluconate

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Hd3p93h2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Hd3p93h1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Hd3p93h3 Artifacts Tags Tags Tags N-terminal Tags (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Gd3p93g2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Gd3p93g1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Gd3p93g3 Artifacts Tags Tags Tags N-terminal Tags (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Fd3p93f2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Fd3p93f1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Fd3p93f3 Artifacts Tags Tags Tags N-terminal Tags (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Ed3p93e2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Ed3p93e1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Ed3p93e3 Artifacts Tags Tags Tags N-terminal Tags (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Dd3p93d2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Dd3p93d1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Dd3p93d3 Artifacts Tags Tags Tags N-terminal Tags (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Cd3p93c2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Cd3p93c1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Cd3p93c3 Artifacts Tags Tags Tags N-terminal Tags (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Bd3p93b2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Bd3p93b1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Bd3p93b3 Artifacts Tags Tags Tags N-terminal Tags (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Ad3p93a2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Ad3p93a1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)
Ad3p93a3 Artifacts Tags Tags Tags N-terminal Tags (Chromohalobacter israelensis ) [TaxId: 141390 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
He3p93H1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: PNP_UDP_1F:ECOD (20:10:01)
Ge3p93G1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: PNP_UDP_1F:ECOD (20:10:01)
Fe3p93F1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: PNP_UDP_1F:ECOD (20:10:01)
Ee3p93E5 A: DEATH domainX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT:F:ECOD (20:10:01)
De3p93D5 A: DEATH domainX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT:F:ECOD (20:10:01)
Ce3p93C1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: RieskeF:ECOD (20:10:01)
Be3p93B5 A: DEATH domainX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT:F:ECOD (20:10:01)
Ae3p93A5 A: DEATH domainX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT:F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
H3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
G3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
G3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
F3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
F3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
E3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
E3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
D3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
D3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
C3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
C3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
B3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
B3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
A3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
A3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02746Mandelate racemase / muconate lactonizing enzyme, N-terminal domain (MR_MLE_N)Mandelate racemase / muconate lactonizing enzyme, N-terminal domainSCOP reports fold similarity with enolase N-terminal domain. Domain
A, B, C, D, E
PF13378Enolase C-terminal domain-like (MR_MLE_C)Enolase C-terminal domain-likeThis domain appears at the C-terminus of many of the proteins that carry the MR_MLE_N Pfam:PF02746 domain. EC:4.2.1.40. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Mandelate racemase/muconate lactonizing enzyme -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR034593D-galactonate dehydratase DgoD-likeFamily
A, B, C, D, E
IPR029065Enolase_C-likeUnknown
A, B, C, D, E
IPR018110Mandelate racemase/muconate lactonizing enzyme, conserved siteConserved Site
A, B, C, D, E
IPR036849Enolase-like, C-terminal domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR013341Mandelate racemase, N-terminal domainDomain
A, B, C, D, E
IPR034589D-mannonate dehydratase-likeFamily
A, B, C, D, E
IPR013342Mandelate racemase, C-terminal domainDomain
A, B, C, D, E
IPR029017Enolase-like, N-terminalHomologous Superfamily