3QO6 | pdb_00003qo6

Crystal structure analysis of the plant protease Deg1


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CRadical_SAMe3qo6C1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Radical_SAMECOD (develop294)
BRadical_SAMe3qo6B1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Radical_SAMECOD (develop294)
ATetR_Ne3qo6A1 A: alpha bundlesX: Cupredoxin-likeH: Cupredoxin-relatedT: Cupredoxin-relatedF: TetR_NECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)
C2.30.42.10 Mainly Beta Roll Pdz3 Domain PDZ domainCATH (4.3.0)
B2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)
B2.30.42.10 Mainly Beta Roll Pdz3 Domain PDZ domainCATH (4.3.0)
A2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)
A2.30.42.10 Mainly Beta Roll Pdz3 Domain PDZ domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF13180PDZ domain (PDZ_2)PDZ domainDomain
A, B, C
PF13365Trypsin-like peptidase domain (Trypsin_2)Trypsin-like peptidase domainThis family includes trypsin-like peptidase domains. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
peptide---
peptide---
E, H, I
peptide---
peptide---
A, B, C
Protease Do-like 1, chloroplastic