Crystal structure of Pseudomonas aeruginosa OccK2 (OpdF)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth B] | d3szdb1 | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Outer membrane carboxylate (Occ) channels | OccK-like (OprK-like) | OpdF porin (OccK2) | (Pseudomonas aeruginosa ) [TaxId: 287 ], | SCOPe (2.08) |
| A [auth B] | d3szdb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Pseudomonas aeruginosa ) [TaxId: 287 ], | SCOPe (2.08) |
| B [auth A] | d3szda_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Outer membrane carboxylate (Occ) channels | OccK-like (OprK-like) | OpdF porin (OccK2) | (Pseudomonas aeruginosa ) [TaxId: 287 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth B] | I-set | e3szdB1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: I-set | ECOD (v294.1) |
| B [auth A] | Fer4_13 | e3szdA2 | A: a/b three-layered sandwiches | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: Fer4_13 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A [auth B] | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (4.3.0) |
| B [auth A] | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth B], B [auth A] | PF03573 | outer membrane porin, OprD family (OprD) | outer membrane porin, OprD family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A [auth B], B [auth A] | porin | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth B], B [auth A] | IPR023614 | Porin domain superfamily | Homologous Superfamily |
| A [auth B], B [auth A] | IPR005318 | Outer membrane porin, bacterial | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Beta-barrel transmembrane | OprD/AlgE superfamily (n=18,S=22) | Outer membrane porin (Opr) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Outer Membrane Carboxylate Channels (Occ) | OccK2 (OpdF) glucuronate channel |
