3UBF | pdb_00003ubf

Crystal structure of Drosophila N-cadherin EC1-3, I

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cadherin	8088102	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8092011	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8092012	4007535	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8092013	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8092014	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8092015	3002049	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_M14	e3ubfA1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Peptidase_M14	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Neural-cadherin	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity cell adhesion molecule binding cadherin binding	axon extension multicellular organismal process axonogenesis cellular developmental process developmental growth cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell growth cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis axon extension multicellular organismal process axonogenesis cellular developmental process developmental growth cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell growth cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development axon extension involved in axon guidance cellular component organization or biogenesis system development developmental process neuron projection extension plasma membrane bounded cell projection organization developmental cell growth growth axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation developmental growth involved in morphogenesis generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development cellular process retinal ganglion cell axon guidance sensory organ development photoreceptor cell differentiation visual system development eye morphogenesis compound eye morphogenesis R8 cell development eye photoreceptor cell differentiation animal organ morphogenesis sensory system development photoreceptor cell development R8 cell differentiation eye development eye photoreceptor cell development animal organ development compound eye photoreceptor development compound eye development sensory organ morphogenesis compound eye photoreceptor cell differentiation establishment of ommatidial planar polarity pattern specification process establishment or maintenance of cell polarity establishment of tissue polarity morphogenesis of a polarized epithelium ommatidial rotation establishment of planar polarity epithelium development morphogenesis of an epithelium tissue development tissue morphogenesis regulation of cellular process negative regulation of biological process regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of dendrite morphogenesis regulation of biological process negative regulation of cellular component organization regulation of cell projection organization regulation of dendrite development negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization regulation of developmental process regulation of nervous system development negative regulation of neurogenesis dendrite development negative regulation of cellular process negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation negative regulation of cell projection organization regulation of anatomical structure morphogenesis regulation of multicellular organismal development negative regulation of dendrite morphogenesis negative regulation of developmental process biological regulation dendrite morphogenesis negative regulation of cell development regulation of plasma membrane bounded cell projection organization cell adhesion cell-cell adhesion cell-cell adhesion mediated by cadherin R7 cell development R7 cell differentiation regulation of growth regulation of cellular component size regulation of biological quality regulation of axon extension regulation of axon extension involved in axon guidance regulation of extent of cell growth regulation of cell size regulation of developmental growth regulation of cell growth regulation of anatomical structure size cell communication axon target recognition homophilic cell-cell adhesion neuron recognition neuron projection fasciculation axonal fasciculation cell recognition calcium-dependent cell-cell adhesion	cellular anatomical structure membrane cell-cell junction anchoring junction cell junction cell periphery plasma membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection axon

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR027397	Catenin binding domain superfamily	Homologous Superfamily
A	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A	IPR000742	EGF-like domain	Domain
A	IPR001791	Laminin G domain	Domain
A	IPR000233	Cadherin, Y-type LIR-motif	Domain
A	IPR056370	DE-cadherin-like, Ig-like domain	Domain
A	IPR039808	Cadherin	Family
A	IPR020894	Cadherin conserved site	Conserved Site
A	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
A	IPR001881	EGF-like calcium-binding domain	Domain
A	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.